Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0220
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20360.1 68415.m02377 expressed protein                             82   3e-16
At5g19060.1 68418.m02266 expressed protein ; expression supporte...    28   3.6  
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila...    28   4.7  

>At2g20360.1 68415.m02377 expressed protein
          Length = 402

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 38/94 (40%), Positives = 59/94 (62%)
 Frame = +3

Query: 246 FRLTGFVGRXVCNKLGKIGTQLILPYRGDFYDAXRLKVCGDLGXVLFTPYHLXDEESIAK 425
           F  TGF+GR +  +L K+G+Q+++P+RG       LK+ GDLG V+   +   DE+SI  
Sbjct: 74  FGATGFLGRYLVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQVVPMKFDPRDEDSIKA 133

Query: 426 XXRYSNGVINLVGRDYETKXFXYNDVHXXVLEEL 527
               +N VINL+GR+YET+ F + D +  + E+L
Sbjct: 134 VMAKANVVINLIGREYETRNFSFEDANHHIAEKL 167



 Score = 37.5 bits (83), Expect = 0.006
 Identities = 22/46 (47%), Positives = 32/46 (69%)
 Frame = +1

Query: 115 HLNGSMSVVYIKAANYSSDRKPXLAAYKRGTGGRSSFNGIVATVFG 252
           HLNG+ +  Y  +++ ++     LA  ++GTGGRSS +GIVATVFG
Sbjct: 34  HLNGTDNCRY--SSSLATKGVGHLA--RKGTGGRSSVSGIVATVFG 75


>At5g19060.1 68418.m02266 expressed protein ; expression supported
           by MPSS
          Length = 551

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 235 RCR*SYCGHQYLAYMLQGWVYDPNCS*RL 149
           RCR  +C     A    GWVY  +CS +L
Sbjct: 272 RCREPWCDGALSALESNGWVYSSHCSFKL 300


>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
           to pre-mRNA splicing factor pre-mRNA splicing factor
           prp1 (SP:Q12381) [Fission yeast]
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 364 PHTFNLWAS*KSPLYGKINWVPIFPNLLHTXRPTNPVNRKLWL 236
           PH   LW S  + L  K+N +     +L T R  NP   +LWL
Sbjct: 825 PHCIPLWLS-LADLEEKVNGLNKARAILTTARKKNPGGAELWL 866


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,369,462
Number of Sequences: 28952
Number of extensions: 192127
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)