Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0219
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical pr...    30   0.95 
Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z34799-6|CAA84317.2|  280|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AF134806-1|AAD29691.1|  280|Caenorhabditis elegans putative zinc...    27   8.9  
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    27   8.9  

>Z67990-6|CAA91937.1|  199|Caenorhabditis elegans Hypothetical
           protein F02D10.6 protein.
          Length = 199

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +3

Query: 351 LNF--HKFEFRVI-MFTKLSVIYGLKLWIGRFCIIYYILNKFQYTSYKLEYKKL 503
           LNF  ++  FR++ M   + ++Y L   I  F I  Y L +F YT Y + YK++
Sbjct: 67  LNFAIYRAGFRLLHMCYNVYILYTLGYMIVPFHISLYFLFEFTYTVYGISYKQM 120


>Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical
           protein C06C6.2 protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 525 LAQNGLPTIFYIQAYMTYIGIYLKYNK*CKTGLSI--VSTH 409
           LA + LPTIF I+ Y  +I   L+  K CK+  S   V TH
Sbjct: 290 LATDALPTIFIIKPYREFIFSTLRCLKLCKSANSANQVGTH 330


>Z34799-6|CAA84317.2|  280|Caenorhabditis elegans Hypothetical
           protein F34D10.5 protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 94  ERYLRDDPSPGTSIPKPLTK 153
           ER+L DDPSP  SI  P  K
Sbjct: 55  ERFLDDDPSPPASILSPSPK 74


>AF134806-1|AAD29691.1|  280|Caenorhabditis elegans putative zinc
           finger transcriptionfactor protein.
          Length = 280

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 94  ERYLRDDPSPGTSIPKPLTK 153
           ER+L DDPSP  SI  P  K
Sbjct: 55  ERFLDDDPSPPASILSPSPK 74


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 535 YGXISAKWPPHNF-LYSSLYDVYWNLFKI 452
           +G  S KW   +  ++SS+ DVYW+L  I
Sbjct: 51  HGMASVKWSLLSLHVWSSILDVYWSLLAI 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,983,880
Number of Sequences: 27780
Number of extensions: 209869
Number of successful extensions: 396
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)