Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0219
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   3.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.2  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 196 QWIIKLNKLCVKT 158
           Q +I++NKLC++T
Sbjct: 264 QILIRMNKLCIQT 276


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 198 KFIRVPNSIQVRAAETLSFVASAPRNV 278
           +FIR+ +S  +  +  L+  AS P N+
Sbjct: 116 EFIRIHHSGSITRSIRLTITASCPMNL 142


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 198 KFIRVPNSIQVRAAETLSFVASAPRNV 278
           +FIR+ +S  +  +  L+  AS P N+
Sbjct: 116 EFIRIHHSGSITRSIRLTITASCPMNL 142


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 419 FQPIDNR*LCKHYYSKFKFMK 357
           FQP DN+   K + SK   MK
Sbjct: 48  FQPTDNKLAMKLFGSKKALMK 68


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 419 FQPIDNR*LCKHYYSKFKFMK 357
           FQP DN+   K + SK   MK
Sbjct: 48  FQPTDNKLAMKLFGSKKALMK 68


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 419 FQPIDNR*LCKHYYSKFKFMK 357
           FQP DN+   K + SK   MK
Sbjct: 48  FQPTDNKLAMKLFGSKKALMK 68


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 198 KFIRVPNSIQVRAAETLSFVASAPRNV 278
           +FIR+ +S  +  +  L+  AS P N+
Sbjct: 55  EFIRIHHSGSITRSIRLTITASCPMNL 81


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 120 RRIVSQVTFSDASR 79
           RRI S +TF D +R
Sbjct: 672 RRIYSPITFQDVAR 685


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,420
Number of Sequences: 438
Number of extensions: 2687
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)