Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0218
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.37 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.37 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.37 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.37 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   2.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   7.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   7.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 289 PAQNEIDIVNARFRNGDPVYKHPMIPGY 372
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 289 PAQNEIDIVNARFRNGDPVYKHPMIPGY 372
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 289 PAQNEIDIVNARFRNGDPVYKHPMIPGY 372
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +1

Query: 289 PAQNEIDIVNARFRNGDPVYKHPMIPGY 372
           P    + I     RNGDP + H  IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 90  NFKKXYFWPNSY 55
           + K+ Y+WPN Y
Sbjct: 151 SMKREYYWPNMY 162


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 212 GSCVLSSHTYRRSDTCTRDNXPCT 141
           G C   +  YR+    T  + PCT
Sbjct: 671 GDCFYENKFYRQEAQWTSSDNPCT 694


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 179 GDTYGSTTHKILLDPSVQHSERLV 250
           GD Y S   K LLD    H + LV
Sbjct: 441 GDRYQSEREKALLDFKTGHRKVLV 464


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 116 IAQPHYIPGYTGHCPEYKY 172
           I   +Y+ GY G  P Y +
Sbjct: 372 INHQNYVQGYQGEHPNYNH 390


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 277 QIYRPAQNEIDIVNARFRNGDPVYKHPMIPGY 372
           QIY+P  N  ++    + N D    H   P Y
Sbjct: 348 QIYQPVTNLTNLTYPSYYNQDVSCTHYQNPEY 379



 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 540 GFMDNGGSGLTHLQEPTQCSA 478
           G +D+GGSG    + P   S+
Sbjct: 409 GVIDDGGSGQNQPESPESSSS 429


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 116 IAQPHYIPGYTGHCPEYKY 172
           I   +Y+ GY G  P Y +
Sbjct: 320 INHQNYVQGYQGEHPNYNH 338


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,877
Number of Sequences: 336
Number of extensions: 3322
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)