Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0218
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    28   0.90 
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   2.7  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.8  
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ...    26   4.8  
SPCC338.12 |||protease inhibitor |Schizosaccharomyces pombe|chr ...    25   6.3  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   6.3  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   6.3  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   8.4  

>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +3

Query: 459 SSNYRRRQSTEWAPVNVSNLILHYP*IPLRSTISTSVCCPTT 584
           SSN R R+ +  + V+VSNL+   P  P  ST S S    TT
Sbjct: 509 SSNRRSRKFSSSSRVSVSNLLAGSPPSPSSSTKSASSSYSTT 550


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 292 AQNEIDIVNARFRNGDPVYKHPMIPGYEGFSG 387
           +  E  I  A   N D  Y  P IP Y GFSG
Sbjct: 329 SDKEFSIWTATECNNDCGYYLPGIPAYHGFSG 360


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 203 HKILLDPSVQHSERLVLSIERPMTSRSTVQHR 298
           ++ ++D  VQHS+RL  S  + ++ RST  H+
Sbjct: 307 YETVVDDLVQHSKRLRNSGRKFLSRRSTSSHK 338


>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +3

Query: 357 HDTRIRRVFGSCAVRFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNVSNLILH 527
           H+  I    G+C ++  +FG++       +L  F +NYR +   +    NVS L LH
Sbjct: 109 HNASIMNAIGACGLQLYKFGQT------VSLVFFENNYRPQSFYDHIKENVS-LGLH 158


>SPCC338.12 |||protease inhibitor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 257 SIAPASLNAARSDREGSCVLSSHTY 183
           S+ PAS++  +SD E S     HTY
Sbjct: 13  SVDPASMDKIKSDLEASGAKIGHTY 37


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 125 PHYIPGYTGHCPEYKYRIGDTYGST 199
           P YIPG+T      ++  GD Y ST
Sbjct: 128 PKYIPGWTNPICIGRHAFGDQYKST 152


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 114 LTKSRAIVNFKKXYFWPNSYV 52
           LTKS +IV F+K YF   +Y+
Sbjct: 333 LTKSSSIVAFEKLYFLNKNYL 353


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 459 KSRRELN**AFSTTRRNVETVRHMTRKPFVSWY 361
           + +R+ N  AF  T       R MTR P   WY
Sbjct: 366 REQRDANSHAFEQTANGKRQFRFMTRGPSDPWY 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,548
Number of Sequences: 5004
Number of extensions: 58352
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)