Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0218
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0576 - 5130589-5131995                                           28   4.9  
05_01_0569 + 5056261-5057712                                           28   6.5  
02_01_0031 - 187798-187887,187996-188179,188468-188640,188917-18...    28   6.5  
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114...    27   8.6  
04_04_0047 + 22346962-22347437,22347874-22348036,22348143-223482...    27   8.6  
03_02_0098 + 5608787-5610812,5610956-5611053                           27   8.6  

>05_01_0576 - 5130589-5131995
          Length = 468

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 160 RVQVSDRRYVWLDNTQDPSRSERAAFREAGAIDRTADD 273
           RV V +R   W D  +DP+    A FR A  + R   D
Sbjct: 106 RVWVRERSTEWWDRMRDPAACPEAEFRRAFRMPRAVFD 143


>05_01_0569 + 5056261-5057712
          Length = 483

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 160 RVQVSDRRYVWLDNTQDPSRSERAAFREAGAIDRTADD 273
           RV V +R   W D  +DP+    A FR A  + R   D
Sbjct: 119 RVWVRERSTEWWDRMRDPAACPEADFRRAFRMPRAVFD 156


>02_01_0031 -
           187798-187887,187996-188179,188468-188640,188917-189399,
           189557-190213,190821-190837,191501-192041
          Length = 714

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 381 FGSCAVRFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAP 500
           F SC ++  +  ESS  LT    C + S Y R    E AP
Sbjct: 452 FTSCILKVYQNAESSGCLTEDLACQYVSLYLRLGGLEEAP 491


>08_02_1023 -
           23710825-23710950,23711037-23711120,23711367-23711492,
           23711593-23711712,23712046-23712153,23712243-23712395,
           23712505-23712600,23712716-23712800,23713278-23714268,
           23714870-23714915,23715806-23715964,23716516-23716651,
           23716734-23716900,23717366-23717696,23717827-23718062,
           23718326-23718514
          Length = 1050

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 120 PNRIIFLGTRXIVPSTSIGSAIRMARQHTRSFSIRACSIQR 242
           P  I+F+G   +  ST++        QH  S S+ AC   R
Sbjct: 844 PYVIVFVGVNGVGKSTNLAKVAYWLLQHNLSVSLAACDTFR 884


>04_04_0047 +
           22346962-22347437,22347874-22348036,22348143-22348217,
           22348302-22348402,22348488-22348603,22348693-22348904,
           22349033-22349124,22349319-22349433,22349654-22349757,
           22349881-22349926,22350007-22350071,22350192-22350272,
           22350356-22350410,22350623-22350711,22350802-22350889,
           22351011-22351091
          Length = 652

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 586 CVVGQHTDVLMVDLSGIYG*WRIRFDTFTGA 494
           C+ G   + ++    G+ G W I+FDTFT A
Sbjct: 142 CITGNRVNGIV---DGVSGSWYIKFDTFTPA 169


>03_02_0098 + 5608787-5610812,5610956-5611053
          Length = 707

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 502 TGAHSVLCLLR*FDEKSQRAELVSFFDDSP 413
           +G H  LC ++  D + +RA L +FF + P
Sbjct: 44  SGCHCFLCAIKEPDARLRRASLAAFFRELP 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,291,611
Number of Sequences: 37544
Number of extensions: 384280
Number of successful extensions: 896
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)