Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0217
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    29   2.8  
05_01_0576 - 5130589-5131995                                           29   3.7  
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    28   6.5  
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811           28   6.5  
05_01_0569 + 5056261-5057712                                           28   6.5  
04_04_0047 + 22346962-22347437,22347874-22348036,22348143-223482...    28   6.5  
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572...    27   8.6  

>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
 Frame = +1

Query: 175 DRRYVWLDNTQDPSRSER-AAFREAGAIDRTADDFQIYRPAQNEIDIVNARF---RNGDP 342
           DR++ +L  T+      R AAF E+G         ++    + EI+I++  F    NG P
Sbjct: 111 DRKWSFLAVTEAVKAGVRLAAFGESG-YKMLLQGGEVAN--EEEINILDENFGAKSNGVP 167

Query: 343 VYKHPMIPGYEGFSGHVPYGFQ-RFGESSKKLTN---SALCDFSSNYRRRQSTEWGSCKL 510
           V  +PM   ++   G    G   + G  SK L     +AL  F  N +      W    L
Sbjct: 168 VI-YPMNGHFQNGHGVASNGLDGKAGFVSKSLEGRAVAALNKFGQNAKMTSDPMWMKKAL 226

Query: 511 VKPDPPLSI 537
             PDPP  +
Sbjct: 227 PPPDPPAMV 235


>05_01_0576 - 5130589-5131995
          Length = 468

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 148 GSLSRVQVSDRRYVWLDNTQDPSRSERAAFREAGAIDRTADD 273
           G   RV V +R   W D  +DP+    A FR A  + R   D
Sbjct: 102 GGGRRVWVRERSTEWWDRMRDPAACPEAEFRRAFRMPRAVFD 143


>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 61  IRPKIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAA 234
           + P +F   +Y G       P+   S    S  R Q++    +WL   Q+P+ S R +
Sbjct: 383 VYPDVFMTNLYYGGTRIAGDPSNCSSPAAVSTVRKQIASHISLWLSQCQEPTSSRRTS 440


>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
          Length = 359

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 484 STEWGSCKLVKPDPPLSINPTEIYHKH 564
           +T  G+   + P PP S+ PT ++H H
Sbjct: 201 TTTTGAGGAISPPPPSSLIPTHLHHHH 227


>05_01_0569 + 5056261-5057712
          Length = 483

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 160 RVQVSDRRYVWLDNTQDPSRSERAAFREAGAIDRTADD 273
           RV V +R   W D  +DP+    A FR A  + R   D
Sbjct: 119 RVWVRERSTEWWDRMRDPAACPEADFRRAFRMPRAVFD 156


>04_04_0047 +
           22346962-22347437,22347874-22348036,22348143-22348217,
           22348302-22348402,22348488-22348603,22348693-22348904,
           22349033-22349124,22349319-22349433,22349654-22349757,
           22349881-22349926,22350007-22350071,22350192-22350272,
           22350356-22350410,22350623-22350711,22350802-22350889,
           22351011-22351091
          Length = 652

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 588 CVVGQHTDVLMVDLSGIYG*WRIRFDQFTGAPLSALP-SSVIRR 460
           C+ G   + ++    G+ G W I+FD FT A    LP + VI R
Sbjct: 142 CITGNRVNGIV---DGVSGSWYIKFDTFTPAAERGLPVTRVISR 182


>04_03_0358 -
           14856490-14856573,14856829-14856874,14857116-14857229,
           14857366-14857401,14857822-14857946,14858052-14858117,
           14858295-14858534,14858900-14859001,14859101-14859138,
           14859219-14859321,14859402-14859524,14860666-14860742,
           14860853-14860998,14861077-14861246
          Length = 489

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 340 PVYKHPMIPGYEGFSGHVPYGFQRFGESSKK 432
           P Y HP I   E  +  +P  F++ GE+ K+
Sbjct: 266 PCYHHPEIQELEFKNSSLPSSFRKLGETEKR 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,950,368
Number of Sequences: 37544
Number of extensions: 411169
Number of successful extensions: 1025
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)