Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0217
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)             61   6e-10
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)               36   0.019
SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)             29   2.9  
SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)            29   2.9  
SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05)              29   3.8  
SB_33310| Best HMM Match : DUF316 (HMM E-Value=5.5)                    28   5.0  
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)                   28   5.0  
SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)                      28   6.6  
SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)                    28   6.6  
SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)                       27   8.7  
SB_58034| Best HMM Match : VWA (HMM E-Value=0)                         27   8.7  
SB_1586| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
          Length = 332

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 6/64 (9%)
 Frame = +2

Query: 125 PHYIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSIERPM------TSRST 286
           P++IPGY G+CP++KY+IG+T+G TT  +L D SV +S + VLS   P       T R T
Sbjct: 47  PYHIPGYCGYCPQFKYQIGETFGRTTSCLLTDNSVAYSGKPVLSDIEPQVPPKADTRRDT 106

Query: 287 VQHR 298
           +++R
Sbjct: 107 IKNR 110



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +1

Query: 376 GFSGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWGSCKLVKPDPPLSINPTEIY 555
           G+SG VP      GE    LTN AL  FSSN    +  +     + +P+  L ++   IY
Sbjct: 235 GYSGFVPRYRGLMGEGYPVLTNKALIAFSSNMENMKKIKDLPVTIERPEVRL-VDTRPIY 293

Query: 556 HK-HVGMLPNYAGHV 597
            K + G++P++ GHV
Sbjct: 294 PKNNTGLVPHFTGHV 308



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 310 IVNARFRNGDPVYKHPMIPGYEGFSGHVPYGFQRFGESSKKLTNSALCDFSSN 468
           I N     GD      M+PGY   +G++P     +G S  + + SA+ DF  N
Sbjct: 107 IKNRAISLGDQKLTDQMVPGY---TGYIPKAEHYYGNSYAETSRSAIADFHQN 156



 Score = 31.5 bits (68), Expect = 0.53
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 134 IPGYTGHCPEYKYRIGDTYGSTTHKILLD 220
           +PGYTG+ P+ ++  G++Y  T+   + D
Sbjct: 124 VPGYTGYIPKAEHYYGNSYAETSRSAIAD 152



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 134 IPGYTGHCPEYKYRIGDTYGSTT 202
           +P +TGH P  K+R G T+G +T
Sbjct: 301 VPHFTGHVPGEKFRYGMTFGYST 323



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
 Frame = +2

Query: 128 HYIPGYTGHCPEYKYRIGDTYGSTTHKILL--DPSVQHSER---LVLSIERP 268
           H+  GY+G  P Y+  +G+ Y   T+K L+    ++++ ++   L ++IERP
Sbjct: 231 HHKSGYSGFVPRYRGLMGEGYPVLTNKALIAFSSNMENMKKIKDLPVTIERP 282


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score = 36.3 bits (80), Expect = 0.019
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 140 GYTGHCPEYKYRIGDTYGSTTHKI 211
           GY G+CP+ KY  G TYG  T K+
Sbjct: 634 GYRGYCPQLKYECGHTYGIATDKL 657


>SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +2

Query: 131 YIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSER 244
           ++PGY G  P+ ++R GDT+G+ T K   D      +R
Sbjct: 19  HLPGYAGFRPQQQWRYGDTFGNDTAKYFQDKRTAQLKR 56


>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
          Length = 2374

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 409  RFGESSKKLTNSALCDFSSNYRRRQSTE--WGSCKLVKPDPPLSINPTEIYHKHV 567
            R G   K  T +      S+ RR+++TE  WGS K   P PP +   +   +KH+
Sbjct: 1004 RSGGKEKNQTKNGASLVQSSKRRKKTTERKWGSGKWEIPLPPPTTRKSSKGNKHL 1058


>SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)
          Length = 646

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 424 TTRRNVESRTAHDPKTLRILVSW 356
           T R+ + S TAHDP++L    +W
Sbjct: 109 TERKRLRSATAHDPRSLSCFTTW 131


>SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05)
          Length = 549

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -2

Query: 354 MLVNGIAITETCVHDVYLVLCWTVDLEVIGRSIDSTSLSECCTLGSRRILCVVEPYVS 181
           ML  G+A+T   + ++  +  + +  EV   +I ST+L  C T   +R   +V  YVS
Sbjct: 347 MLSAGLALTSKSILNIAWLTIYLIGSEVFPTTIRSTALGMCSTF--QRCGALVAGYVS 402


>SB_33310| Best HMM Match : DUF316 (HMM E-Value=5.5)
          Length = 353

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +1

Query: 421 SSKKLTNSALCDFSSNYRRRQSTEWGSCKLVKP 519
           S + LTNS   DF++N+RR++ T++    L KP
Sbjct: 160 SMQNLTNSK-SDFNNNFRRKKITDFYGFHLSKP 191


>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
          Length = 274

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 121 PTALYSWVHGSLSRVQVS 174
           P A Y W HG+LSR++ S
Sbjct: 103 PLAHYPWFHGTLSRIEAS 120


>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1602

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 143 YTGHCPEYKYRIGDTYGSTTHKILLDPSVQH----SERLVLSIERPMTSRSTVQH 295
           YT +   Y YR+ +  GS       +P +QH     +R +  IER + +R   +H
Sbjct: 311 YTNNTKNYAYRLREYDGSWLEGRFYEPELQHVSLDEQRDLFRIERVIRTRGKGRH 365


>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
          Length = 1318

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 143 YTGHCPEYKYRIGDTYGSTTHKILLDPSVQH----SERLVLSIERPMTSRSTVQH 295
           YT +   Y YR+ +  GS       +P +QH     +R +  IER + +R   +H
Sbjct: 107 YTNNTKNYAYRLREYDGSWLEGRFYEPELQHVSLDEQRDLFRIERVIRTRGKGRH 161


>SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)
          Length = 465

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = -2

Query: 390 MTRKPFVSWYHGMLVNGIAITETCVHDVYLVLCWTVDLEV 271
           + ++PF+  YH +LVN +  +  C + V L++  T++ ++
Sbjct: 210 LNKRPFI--YHQLLVNEVHASVHCFNRVILIISGTINRDL 247


>SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)
          Length = 212

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 352 ACKRDRHYGNVRSRCLSRSVLDG 284
           +C  D+H+   R  C+S+ ++DG
Sbjct: 148 SCPMDKHHVETREACVSKGLIDG 170


>SB_58034| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1203

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 496 GSCKLVKPDPPLSINPTEIYHKHVGML 576
           G+CK V P PP  I P  IY   +G L
Sbjct: 215 GTCKRVIPTPPPIIAPQCIYKADLGFL 241


>SB_1586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
 Frame = -2

Query: 366 WYHGMLVNGIAITETCV-----HDVYLVLCWTVDLEVIGRSIDSTSLSECCTLGSRRILC 202
           WYHG L N +  T   V      DV  V  W     V G  + +T L  C ++ +   LC
Sbjct: 31  WYHGQLGNSVINTVQIVPRYHLQDVLRVGEWVFGGAVCGFWVTTTILCGCASVLN---LC 87

Query: 201 VV--EPYV---SPIRY 169
           VV  + YV   SP+ Y
Sbjct: 88  VVSWDRYVTVTSPLNY 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,841,323
Number of Sequences: 59808
Number of extensions: 469383
Number of successful extensions: 1315
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)