Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0217
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10770.1 68416.m01296 expressed protein                             31   0.58 
At5g61350.1 68418.m07698 protein kinase family protein contains ...    30   1.0  
At3g10770.2 68416.m01297 expressed protein                             30   1.0  
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote...    29   2.4  
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    29   2.4  
At5g67030.2 68418.m08451 zeaxanthin epoxidase (ZEP) (ABA1) ident...    29   3.1  
At5g67030.1 68418.m08450 zeaxanthin epoxidase (ZEP) (ABA1) ident...    29   3.1  
At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase fa...    29   3.1  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    28   5.4  
At5g01970.1 68418.m00116 expressed protein                             27   7.2  
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30...    27   9.5  
At1g77500.1 68414.m09025 expressed protein contains Pfam domains...    27   9.5  
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu...    27   9.5  

>At3g10770.1 68416.m01296 expressed protein
          Length = 333

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
 Frame = +1

Query: 202 TQDPSRSERAAF---REAGAIDRTAD---DFQIYRPAQNEIDIVNARFRNGDPVYKHPMI 363
           T+D  R+ R A    RE    D   D   D  +  PA   + ++ +  ++  P+  H  I
Sbjct: 208 TRDSGRTSRVAIIRDREKDRYDPDYDRSYDRYVVDPAYRYVRVMPSG-QSFSPMPIH--I 264

Query: 364 PGYEGFSGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWGSCKLVKPDPPLSINP 543
           P ++GF  H+P G Q        L N AL  F+ N      T W +  ++    PL+ + 
Sbjct: 265 PFHDGFFPHMPRGHQANLNYGHPL-NPALSPFTHNV--ASYTPWPNSPVMNYAQPLNGSD 321

Query: 544 TEIY 555
           T +Y
Sbjct: 322 TNLY 325


>At5g61350.1 68418.m07698 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 842

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 300 RDRHRERTFP*WRSRLQASHDTRIRRVFGSCAVRLSTFRRVVEKAH*FSS 449
           +D  ++ +F  W   L ASH + I    GS + R+S F     K++ FSS
Sbjct: 453 KDWQKQNSFSSWLLPLHASHSSYISSKGGSTSRRMSIFGSKKSKSNGFSS 502


>At3g10770.2 68416.m01297 expressed protein
          Length = 325

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 31/118 (26%), Positives = 51/118 (43%)
 Frame = +1

Query: 202 TQDPSRSERAAFREAGAIDRTADDFQIYRPAQNEIDIVNARFRNGDPVYKHPMIPGYEGF 381
           T+D  R+ R A       DR   D+   R     + ++ +  ++  P+  H  IP ++GF
Sbjct: 208 TRDSGRTSRVAIIRDREKDRYDPDYD--RSYDRYVRVMPSG-QSFSPMPIH--IPFHDGF 262

Query: 382 SGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWGSCKLVKPDPPLSINPTEIY 555
             H+P G Q        L N AL  F+ N      T W +  ++    PL+ + T +Y
Sbjct: 263 FPHMPRGHQANLNYGHPL-NPALSPFTHNV--ASYTPWPNSPVMNYAQPLNGSDTNLY 317


>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinase erecta,
           Arabidopsis thaliana
          Length = 864

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -2

Query: 348 VNGIAITETCVHDVYLVLCW-TVDLEVIGRSIDSTSLSECCTLGSRRILCVVEPYVS 181
           V G A T TC +DVY   C+  + LE+I   +    +S C     ++IL  + PY+S
Sbjct: 681 VPGSAATATCAYDVY---CFGKILLELITGKL---GISSCKETQFKKILTEIMPYIS 731


>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
            pentatricopeptide (PPR) repeat-containing protein
            contains Pfam profiles:  PF00271 helicase conserved
            C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH
            box helicase
          Length = 1145

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 374  KGFRVMCRTAFNVSASR--RKSSLIQLSATFRRITEEGRA 487
            KG ++  R A+N+  S   RK SL +    FR++TEEG A
Sbjct: 1038 KGVKLDAR-AYNIMISELCRKDSLSKADILFRKMTEEGHA 1076


>At5g67030.2 68418.m08451 zeaxanthin epoxidase (ZEP) (ABA1)
           identical to GI:9857296 AtABA1; controls Pfam profiles
           PF01360: Monooxygenase and PF00498: FHA domain;
           identical to cDNA AtABA1,  GI:9857295
          Length = 610

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 588 CVVGQHTDVLMVDLSGIYG*WRIRFDQFTGAPLSALP-SSVIRR 460
           C+ G   + L+    GI G W ++FD FT A    LP + VI R
Sbjct: 152 CITGDRINGLV---DGISGTWYVKFDTFTPAASRGLPVTRVISR 192


>At5g67030.1 68418.m08450 zeaxanthin epoxidase (ZEP) (ABA1)
           identical to GI:9857296 AtABA1; controls Pfam profiles
           PF01360: Monooxygenase and PF00498: FHA domain;
           identical to cDNA AtABA1,  GI:9857295
          Length = 667

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 588 CVVGQHTDVLMVDLSGIYG*WRIRFDQFTGAPLSALP-SSVIRR 460
           C+ G   + L+    GI G W ++FD FT A    LP + VI R
Sbjct: 152 CITGDRINGLV---DGISGTWYVKFDTFTPAASRGLPVTRVISR 192


>At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P32019 Type II
           inositol-1,4,5-trisphosphate 5-phosphatase  precursor
           (EC 3.1.3.56) {Homo sapiens}; contains Pfam profile
           PF03372: Endonuclease/Exonuclease/phosphatase family
          Length = 334

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 131 YIPGYTGHCPEYKYRIGDTYGSTTHKI 211
           Y  G  G  P YKY +G +   T+HKI
Sbjct: 257 YSEGTLGFKPTYKYNVGSSDYDTSHKI 283


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 168 SIGSAIRMARQHTRSFSIRACSIQRGW 248
           SIGSA R  RQ T++ S+R    Q  W
Sbjct: 234 SIGSACRRLRQLTKNESVRKMVCQNAW 260


>At5g01970.1 68418.m00116 expressed protein
          Length = 351

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 362 YQDTKGFRVMCRTAFNVSASRRKSSLIQLSATFRRITEEGRAL 490
           Y   +GF+ M          +  SSL Q+  TF +  E+GR L
Sbjct: 89  YLSDEGFKKMDNPKLRRGLDKLTSSLNQIGDTFEKAFEDGRTL 131


>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
           nearly identical to SC35-like splicing factor SCL30, 30
           kD [Arabidopsis thaliana] GI:9843657;
           Serine/arginine-rich protein/putative splicing factor,
           Arabidopdis thaliana, EMBL:AF099940; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 343 RDRHYGNVRSRCLSRSVLDGRSGSHRPFYR 254
           RDR +G  RSR +SRS    R    R  YR
Sbjct: 148 RDRSHGRSRSRSISRSRSPRRPSDSRSRYR 177


>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 879

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 364 PGYEGFSGHVPYGFQRFGESSKKLTNSALCDFS-SNYRRRQSTEWGS 501
           PGY  ++G  PYG +      K    S    F   N+R  ++ +W S
Sbjct: 184 PGYPNYTGENPYGNRGMYYMKKSAPQSRPFIFQPENHRVEENAQWPS 230


>At1g07350.1 68414.m00783 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to GB:Y09506 from
           [Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
           (1997))
          Length = 382

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -1

Query: 343 RDRHYGNVRSRCLSRSV-LDGRSGSHRPFYR 254
           R R Y + R R  S S    GRS S+ PFYR
Sbjct: 191 RSRSYSSDRGRSYSPSYGRRGRSSSYSPFYR 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,451,967
Number of Sequences: 28952
Number of extensions: 331652
Number of successful extensions: 868
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)