Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0216
(618 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 25 0.38
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 25 0.38
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 25 0.38
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 25 0.38
U09586-3|AAC47272.1| 470|Tribolium castaneum integrase protein. 24 1.2
DQ659253-1|ABG47451.1| 439|Tribolium castaneum imaginal disc gr... 23 2.1
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 23 2.7
AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicas... 21 6.3
AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain tran... 21 8.3
AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription fa... 21 8.3
AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia or... 21 8.3
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 25.4 bits (53), Expect = 0.38
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 289 PAQNEIDIVNARFRNGDPVYKHPMIPGY 372
P + I RNGDP + H IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 25.4 bits (53), Expect = 0.38
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 289 PAQNEIDIVNARFRNGDPVYKHPMIPGY 372
P + I RNGDP + H IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
CHS1B protein.
Length = 1558
Score = 25.4 bits (53), Expect = 0.38
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 289 PAQNEIDIVNARFRNGDPVYKHPMIPGY 372
P + I RNGDP + H IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
CHS1A protein.
Length = 1558
Score = 25.4 bits (53), Expect = 0.38
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 289 PAQNEIDIVNARFRNGDPVYKHPMIPGY 372
P + I RNGDP + H IP Y
Sbjct: 417 PVSISLLIAACGLRNGDPCFFHDTIPPY 444
>U09586-3|AAC47272.1| 470|Tribolium castaneum integrase protein.
Length = 470
Score = 23.8 bits (49), Expect = 1.2
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -1
Query: 90 NFKKKYFWPNSY 55
+ K++Y+WPN Y
Sbjct: 151 SMKREYYWPNMY 162
>DQ659253-1|ABG47451.1| 439|Tribolium castaneum imaginal disc
growth factor 2 protein.
Length = 439
Score = 23.0 bits (47), Expect = 2.1
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +1
Query: 319 ARFRNGDPVYKHPMIPGYEGFSGHVPYGFQRFGESSKKLT--NSALCDFSSNYRR 477
+ FR G ++ + + H+ YG+ E + KLT N NYR+
Sbjct: 34 SHFRQGQAKFEITDLEPALQYCTHLIYGYAAIDEETYKLTPLNEQFDVIKDNYRK 88
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 22.6 bits (46), Expect = 2.7
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -2
Query: 212 GSCVLSSHTYRRSDTCTRDNDPCT 141
G C + YR+ T ++PCT
Sbjct: 671 GDCFYENKFYRQEAQWTSSDNPCT 694
>AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicase
protein.
Length = 580
Score = 21.4 bits (43), Expect = 6.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 179 GDTYGSTTHKILLDPSVQHSERLV 250
GD Y S K LLD H + LV
Sbjct: 441 GDRYQSEREKALLDFKTGHRKVLV 464
>AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain
transcription factor Maxillopediaprotein.
Length = 523
Score = 21.0 bits (42), Expect = 8.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +2
Query: 116 IAQPHYIPGYTGHCPEYKY 172
I +Y+ GY G P Y +
Sbjct: 372 INHQNYVQGYQGEHPNYNH 390
>AJ415419-1|CAC94468.1| 441|Tribolium castaneum transcription
factor protein.
Length = 441
Score = 21.0 bits (42), Expect = 8.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 277 QIYRPAQNEIDIVNARFRNGDPVYKHPMIPGY 372
QIY+P N ++ + N D H P Y
Sbjct: 348 QIYQPVTNLTNLTYPSYYNQDVSCTHYQNPEY 379
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 541 GFMDNGGSGLTHLQEPTQCSA 479
G +D+GGSG + P S+
Sbjct: 409 GVIDDGGSGQNQPESPESSSS 429
>AF187069-1|AAF03889.1| 471|Tribolium castaneum proboscipedia
ortholog protein.
Length = 471
Score = 21.0 bits (42), Expect = 8.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +2
Query: 116 IAQPHYIPGYTGHCPEYKY 172
I +Y+ GY G P Y +
Sbjct: 320 INHQNYVQGYQGEHPNYNH 338
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,366
Number of Sequences: 336
Number of extensions: 3636
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -