Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0216
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7) 61 6e-10
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33) 36 0.020
SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9) 29 3.0
SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05) 29 4.0
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13) 28 5.3
SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1) 28 7.0
SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07) 28 7.0
SB_17429| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-34) 28 7.0
SB_30216| Best HMM Match : TIL (HMM E-Value=3.1) 27 9.2
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_1586| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
Length = 332
Score = 61.3 bits (142), Expect = 6e-10
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 6/64 (9%)
Frame = +2
Query: 125 PHYIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLSIERPM------TSRST 286
P++IPGY G+CP++KY+IG+T+G TT +L D SV +S + VLS P T R T
Sbjct: 47 PYHIPGYCGYCPQFKYQIGETFGRTTSCLLTDNSVAYSGKPVLSDIEPQVPPKADTRRDT 106
Query: 287 VQHR 298
+++R
Sbjct: 107 IKNR 110
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 310 IVNARFRNGDPVYKHPMIPGYEGFSGHVPYGFQRFGESSKKLTNSALCDFSSN 468
I N GD M+PGY +G++P +G S + + SA+ DF N
Sbjct: 107 IKNRAISLGDQKLTDQMVPGY---TGYIPKAEHYYGNSYAETSRSAIADFHQN 156
Score = 31.5 bits (68), Expect = 0.57
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 134 IPGYTGHCPEYKYRIGDTYGSTTHKILLD 220
+PGYTG+ P+ ++ G++Y T+ + D
Sbjct: 124 VPGYTGYIPKAEHYYGNSYAETSRSAIAD 152
Score = 31.5 bits (68), Expect = 0.57
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +1
Query: 376 GFSGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPV 504
G+SG VP GE LTN AL FSSN + + PV
Sbjct: 235 GYSGFVPRYRGLMGEGYPVLTNKALIAFSSNMENMKKIKDLPV 277
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 134 IPGYTGHCPEYKYRIGDTYGSTT 202
+P +TGH P K+R G T+G +T
Sbjct: 301 VPHFTGHVPGEKFRYGMTFGYST 323
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 534 INPTEIYHKH-VGMLPNYAGHVPGCVFRF 617
++ IY K+ G++P++ GHVPG FR+
Sbjct: 287 VDTRPIYPKNNTGLVPHFTGHVPGEKFRY 315
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = +2
Query: 128 HYIPGYTGHCPEYKYRIGDTYGSTTHKILL--DPSVQHSER---LVLSIERP 268
H+ GY+G P Y+ +G+ Y T+K L+ ++++ ++ L ++IERP
Sbjct: 231 HHKSGYSGFVPRYRGLMGEGYPVLTNKALIAFSSNMENMKKIKDLPVTIERP 282
>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
Length = 834
Score = 36.3 bits (80), Expect = 0.020
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 140 GYTGHCPEYKYRIGDTYGSTTHKI 211
GY G+CP+ KY G TYG T K+
Sbjct: 634 GYRGYCPQLKYECGHTYGIATDKL 657
>SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 35.9 bits (79), Expect = 0.026
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 131 YIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSER 244
++PGY G P+ ++R GDT+G+ T K D +R
Sbjct: 19 HLPGYAGFRPQQQWRYGDTFGNDTAKYFQDKRTAQLKR 56
>SB_23825| Best HMM Match : C4dic_mal_tran (HMM E-Value=4.9)
Length = 646
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 424 TTRRNVESRTAHDPKTLRILVSW 356
T R+ + S TAHDP++L +W
Sbjct: 109 TERKRLRSATAHDPRSLSCFTTW 131
>SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05)
Length = 549
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -1
Query: 354 MLVNGIAITETCVHDVYLVLCWTVDLEVIGRSIDSTSLSECCTLGSRRILCVVEPYVS 181
ML G+A+T + ++ + + + EV +I ST+L C T +R +V YVS
Sbjct: 347 MLSAGLALTSKSILNIAWLTIYLIGSEVFPTTIRSTALGMCSTF--QRCGALVAGYVS 402
>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
Length = 274
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 121 PTALYSWVHGSLSRVQVS 174
P A Y W HG+LSR++ S
Sbjct: 103 PLAHYPWFHGTLSRIEAS 120
>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1602
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 143 YTGHCPEYKYRIGDTYGSTTHKILLDPSVQH----SERLVLSIERPMTSRSTVQH 295
YT + Y YR+ + GS +P +QH +R + IER + +R +H
Sbjct: 311 YTNNTKNYAYRLREYDGSWLEGRFYEPELQHVSLDEQRDLFRIERVIRTRGKGRH 365
>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
Length = 1318
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 143 YTGHCPEYKYRIGDTYGSTTHKILLDPSVQH----SERLVLSIERPMTSRSTVQH 295
YT + Y YR+ + GS +P +QH +R + IER + +R +H
Sbjct: 107 YTNNTKNYAYRLREYDGSWLEGRFYEPELQHVSLDEQRDLFRIERVIRTRGKGRH 161
>SB_32646| Best HMM Match : IQ (HMM E-Value=8.5e-07)
Length = 465
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/40 (27%), Positives = 25/40 (62%)
Frame = -1
Query: 390 MTRKPFVSWYHGMLVNGIAITETCVHDVYLVLCWTVDLEV 271
+ ++PF+ YH +LVN + + C + V L++ T++ ++
Sbjct: 210 LNKRPFI--YHQLLVNEVHASVHCFNRVILIISGTINRDL 247
>SB_17429| Best HMM Match : Fibrinogen_C (HMM E-Value=3.1e-34)
Length = 499
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 588 LRSWATYRRAYGRSQWDLWIMEDQV*PIYRSPLS 487
+R W YR +G + W+ D++ + SP++
Sbjct: 368 IRKWCDYRHGFGNLSGEFWLGLDKIHRLTSSPVT 401
>SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)
Length = 212
Score = 27.5 bits (58), Expect = 9.2
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -3
Query: 352 ACKRDRHYGNVRSRCLSRSVLDG 284
+C D+H+ R C+S+ ++DG
Sbjct: 148 SCPMDKHHVETREACVSKGLIDG 170
>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2102
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 433 LTNSALCDFSSNYRRRQSTEWAPVNGSNLILHYP*IPLRSTISTSVCCPTTQVTCQAASS 612
L +SAL +++ R + A S L+ H P S STS+ CP +T A+S+
Sbjct: 219 LASSALVKHMTSHPRPSDSSTA---SSALVKHMASHPRPSDSSTSIVCPGPVITALASSA 275
>SB_1586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 27.5 bits (58), Expect = 9.2
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Frame = -1
Query: 366 WYHGMLVNGIAITETCV-----HDVYLVLCWTVDLEVIGRSIDSTSLSECCTLGSRRILC 202
WYHG L N + T V DV V W V G + +T L C ++ + LC
Sbjct: 31 WYHGQLGNSVINTVQIVPRYHLQDVLRVGEWVFGGAVCGFWVTTTILCGCASVLN---LC 87
Query: 201 VV--EPYV---SPIRY 169
VV + YV SP+ Y
Sbjct: 88 VVSWDRYVTVTSPLNY 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,424,595
Number of Sequences: 59808
Number of extensions: 487026
Number of successful extensions: 1363
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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