Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0216
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61350.1 68418.m07698 protein kinase family protein contains ... 30 1.1
At4g39270.1 68417.m05562 leucine-rich repeat transmembrane prote... 29 2.5
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 2.5
At5g49110.1 68418.m06079 expressed protein ; expression support... 29 3.3
At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase fa... 29 3.3
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ... 28 5.7
At5g01970.1 68418.m00116 expressed protein 27 7.5
At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger) fa... 27 7.5
At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2 (PL... 27 10.0
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 10.0
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 27 10.0
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 27 10.0
>At5g61350.1 68418.m07698 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 842
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 300 RDRHRERTFP*WRSRLQASHDTRIRRVFGSCAVRLSTFRRVVEKAH*FSS 449
+D ++ +F W L ASH + I GS + R+S F K++ FSS
Sbjct: 453 KDWQKQNSFSSWLLPLHASHSSYISSKGGSTSRRMSIFGSKKSKSNGFSS 502
>At4g39270.1 68417.m05562 leucine-rich repeat transmembrane protein
kinase, putative receptor protein kinase erecta,
Arabidopsis thaliana
Length = 864
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 348 VNGIAITETCVHDVYLVLCW-TVDLEVIGRSIDSTSLSECCTLGSRRILCVVEPYVS 181
V G A T TC +DVY C+ + LE+I + +S C ++IL + PY+S
Sbjct: 681 VPGSAATATCAYDVY---CFGKILLELITGKL---GISSCKETQFKKILTEIMPYIS 731
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH
box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 374 KGFRVMCRTAFNVSASR--RKSSLIQLSATFRRITEEGRA 487
KG ++ R A+N+ S RK SL + FR++TEEG A
Sbjct: 1038 KGVKLDAR-AYNIMISELCRKDSLSKADILFRKMTEEGHA 1076
>At5g49110.1 68418.m06079 expressed protein ; expression supported
by MPSS
Length = 1487
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 406 QRFGESSKKLTNSALCDFSSNYRRRQSTEWAPV 504
++FGESS + +AL ++YR + +W PV
Sbjct: 320 RKFGESSLGMLRTALLTAYNDYRLSKDCKWLPV 352
>At1g47510.1 68414.m05273 endonuclease/exonuclease/phosphatase
family protein similar to SP|P32019 Type II
inositol-1,4,5-trisphosphate 5-phosphatase precursor
(EC 3.1.3.56) {Homo sapiens}; contains Pfam profile
PF03372: Endonuclease/Exonuclease/phosphatase family
Length = 334
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 131 YIPGYTGHCPEYKYRIGDTYGSTTHKI 211
Y G G P YKY +G + T+HKI
Sbjct: 257 YSEGTLGFKPTYKYNVGSSDYDTSHKI 283
>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
(ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
from [Arabidopsis thaliana]; contains Pfam profiles
PF01344: Kelch motif, PF00785: PAC motif and PF00646:
F-box domain; contains TIGRfam profile TIGR00229: PAS
domain S-boxidentical to cDNA Adagio 3 (ADO3)
GI:13487071
Length = 619
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +3
Query: 168 SIGSAIRMARQHTRSFSIRACSIQRGW 248
SIGSA R RQ T++ S+R Q W
Sbjct: 234 SIGSACRRLRQLTKNESVRKMVCQNAW 260
>At5g01970.1 68418.m00116 expressed protein
Length = 351
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +2
Query: 362 YQDTKGFRVMCRTAFNVSASRRKSSLIQLSATFRRITEEGRAL 490
Y +GF+ M + SSL Q+ TF + E+GR L
Sbjct: 89 YLSDEGFKKMDNPKLRRGLDKLTSSLNQIGDTFEKAFEDGRTL 131
>At3g60220.1 68416.m06730 zinc finger (C3HC4-type RING finger)
family protein (ATL4) contains Pfam profile: PF00097
zinc finger, C3HC4 type (RING finger)
Length = 334
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 540 DLWIMEDQV*PIYRSPLSALPSSVIR 463
D+W++ +Q P+ RSPL A S +++
Sbjct: 146 DIWLVSNQTCPLCRSPLFASESDLMK 171
>At4g00240.1 68417.m00031 phospholipase D beta 2 / PLD beta 2
(PLDBETA2) / PLDdelta1 identical to SP|O23078
Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD
beta 2) (PLDdelta1) [Arabidopsis thaliana]; contains
Pfam profiles: PF00614 phospholipase D.active site
motif, PF00168 C2 domain
Length = 927
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 531 SINPTEIYHKHVGMLPNYAGHVPGCVF 611
S+N +YH VG P Y G VPG F
Sbjct: 261 SMNKLSVYHSGVGAGPYYQG-VPGTYF 286
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -3
Query: 343 RDRHYGNVRSRCLSRSVLDGRSGSHRPFYR 254
RDR +G RSR +SRS R R YR
Sbjct: 148 RDRSHGRSRSRSISRSRSPRRPSDSRSRYR 177
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 364 PGYEGFSGHVPYGFQRFGESSKKLTNSALCDFS-SNYRRRQSTEWAPVNG 510
PGY ++G PYG + K S F N+R ++ +W +G
Sbjct: 184 PGYPNYTGENPYGNRGMYYMKKSAPQSRPFIFQPENHRVEENAQWPSDSG 233
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 343 RDRHYGNVRSRCLSRSV-LDGRSGSHRPFYR 254
R R Y + R R S S GRS S+ PFYR
Sbjct: 191 RSRSYSSDRGRSYSPSYGRRGRSSSYSPFYR 221
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,822,884
Number of Sequences: 28952
Number of extensions: 341672
Number of successful extensions: 877
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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