Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0214
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0576 - 5130589-5131995                                           28   4.9  
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572...    28   4.9  
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    28   6.5  
05_01_0569 + 5056261-5057712                                           27   8.6  

>05_01_0576 - 5130589-5131995
          Length = 468

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 148 GSLSRVQVSDRRYVWLDNTQDPSRSERAAFREAGAIDRTXDD 273
           G   RV V +R   W D  +DP+    A FR A  + R   D
Sbjct: 102 GGGRRVWVRERSTEWWDRMRDPAACPEAEFRRAFRMPRAVFD 143


>04_03_0358 -
           14856490-14856573,14856829-14856874,14857116-14857229,
           14857366-14857401,14857822-14857946,14858052-14858117,
           14858295-14858534,14858900-14859001,14859101-14859138,
           14859219-14859321,14859402-14859524,14860666-14860742,
           14860853-14860998,14861077-14861246
          Length = 489

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 340 PVYKHPMIPGYEGXSGHVPYGFQRFGESSKK 432
           P Y HP I   E  +  +P  F++ GE+ K+
Sbjct: 266 PCYHHPEIQELEFKNSSLPSSFRKLGETEKR 296


>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 61  IRPKIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAA 234
           + P +F   +Y G       P+   S    S  R Q++    +WL   Q+P+ S R +
Sbjct: 383 VYPDVFMTNLYYGGTRIAGDPSNCSSPAAVSTVRKQIASHISLWLSQCQEPTSSRRTS 440


>05_01_0569 + 5056261-5057712
          Length = 483

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 160 RVQVSDRRYVWLDNTQDPSRSERAAFREAGAIDRTXDD 273
           RV V +R   W D  +DP+    A FR A  + R   D
Sbjct: 119 RVWVRERSTEWWDRMRDPAACPEADFRRAFRMPRAVFD 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,699
Number of Sequences: 37544
Number of extensions: 313716
Number of successful extensions: 667
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)