Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0214
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7) 60 1e-09
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33) 36 0.019
SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05) 29 2.9
SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1) 28 5.0
SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13) 28 5.0
SB_47102| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
>SB_59017| Best HMM Match : D-aminoacyl_C (HMM E-Value=5.7)
Length = 332
Score = 60.1 bits (139), Expect = 1e-09
Identities = 30/64 (46%), Positives = 45/64 (70%), Gaps = 6/64 (9%)
Frame = +2
Query: 125 PHYIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSERLVLS-IE-----RXMTSRST 286
P++IPGY G+CP++KY+IG+T+G TT +L D SV +S + VLS IE + T R T
Sbjct: 47 PYHIPGYCGYCPQFKYQIGETFGRTTSCLLTDNSVAYSGKPVLSDIEPQVPPKADTRRDT 106
Query: 287 VQHR 298
+++R
Sbjct: 107 IKNR 110
Score = 31.5 bits (68), Expect = 0.53
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 134 IPGYTGHCPEYKYRIGDTYGSTTHKILLD 220
+PGYTG+ P+ ++ G++Y T+ + D
Sbjct: 124 VPGYTGYIPKAEHYYGNSYAETSRSAIAD 152
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 134 IPGYTGHCPEYKYRIGDTYGSTT 202
+P +TGH P K+R G T+G +T
Sbjct: 301 VPHFTGHVPGEKFRYGMTFGYST 323
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = +1
Query: 358 MIPGYEGXSGHVPYGFQRFGESSKKLXNSALCDFSSN---YRRKA 483
M+PGY +G++P +G S + SA+ DF N +R+KA
Sbjct: 123 MVPGY---TGYIPKAEHYYGNSYAETSRSAIADFHQNQLKHRQKA 164
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 128 HYIPGYTGHCPEYKYRIGDTYGSTTHKILL 217
H+ GY+G P Y+ +G+ Y T+K L+
Sbjct: 231 HHKSGYSGFVPRYRGLMGEGYPVLTNKALI 260
>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
Length = 834
Score = 36.3 bits (80), Expect = 0.019
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 140 GYTGHCPEYKYRIGDTYGSTTHKI 211
GY G+CP+ KY G TYG T K+
Sbjct: 634 GYRGYCPQLKYECGHTYGIATDKL 657
>SB_28818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 35.9 bits (79), Expect = 0.025
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 131 YIPGYTGHCPEYKYRIGDTYGSTTHKILLDPSVQHSER 244
++PGY G P+ ++R GDT+G+ T K D +R
Sbjct: 19 HLPGYAGFRPQQQWRYGDTFGNDTAKYFQDKRTAQLKR 56
>SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05)
Length = 549
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -2
Query: 354 MLVNGIAITETCVHDVYLVLCWTVDLEVIXRSIDSTSLSECCTLGSRRILCVVEPYVS 181
ML G+A+T + ++ + + + EV +I ST+L C T +R +V YVS
Sbjct: 347 MLSAGLALTSKSILNIAWLTIYLIGSEVFPTTIRSTALGMCSTF--QRCGALVAGYVS 402
>SB_51718| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1602
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 143 YTGHCPEYKYRIGDTYGSTTHKILLDPSVQH----SERLVLSIERXMTSRSTVQH 295
YT + Y YR+ + GS +P +QH +R + IER + +R +H
Sbjct: 311 YTNNTKNYAYRLREYDGSWLEGRFYEPELQHVSLDEQRDLFRIERVIRTRGKGRH 365
>SB_30668| Best HMM Match : NIF3 (HMM E-Value=5.1)
Length = 1318
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 143 YTGHCPEYKYRIGDTYGSTTHKILLDPSVQH----SERLVLSIERXMTSRSTVQH 295
YT + Y YR+ + GS +P +QH +R + IER + +R +H
Sbjct: 107 YTNNTKNYAYRLREYDGSWLEGRFYEPELQHVSLDEQRDLFRIERVIRTRGKGRH 161
>SB_48419| Best HMM Match : SH2 (HMM E-Value=4.6e-13)
Length = 274
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 121 PTALYSWVHGSLSRVQVS 174
P A Y W HG+LSR++ S
Sbjct: 103 PLAHYPWFHGTLSRIEAS 120
>SB_47102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 303
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 494 WXPVNWSN*FSIIXNPTEIYHKHVGMFXPLRRSR 595
W P NW+ FS + P +Y+ ++ P++ R
Sbjct: 131 WDPANWTLEFSDVLEPPIVYNGYLICAYPIKTDR 164
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,423,765
Number of Sequences: 59808
Number of extensions: 373278
Number of successful extensions: 879
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -