Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0210
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ...    29   1.9  
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical...    29   1.9  
AF025472-3|AAB71075.2|  843|Caenorhabditis elegans Hypothetical ...    28   3.3  
U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defecti...    27   4.4  
Z30423-10|CAA83014.1|  216|Caenorhabditis elegans Hypothetical p...    27   5.8  

>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 108  EHDQCCSRAQVEDLQEN*KNGQEHP*RHRQSGPGDRGPR 224
            E   C S  +   L EN KN    P RH+Q+G  D+  +
Sbjct: 1052 ERTSCPSSKKRPKLAENEKNAASPPTRHQQNGSKDKNEK 1090


>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
            protein Y57A10A.1 protein.
          Length = 1342

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 108  EHDQCCSRAQVEDLQEN*KNGQEHP*RHRQSGPGDRGPR 224
            E   C S  +   L EN KN    P RH+Q+G  D+  +
Sbjct: 1052 ERTSCPSSKKRPKLAENEKNAASPPTRHQQNGSKDKNEK 1090


>AF025472-3|AAB71075.2|  843|Caenorhabditis elegans Hypothetical
           protein ZK250.6 protein.
          Length = 843

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 246 MIFKRTP*IYSXILICNLITALRLNNKTFNFKYNLKLMS 362
           ++ KR    +   L C   T+ R+NN +   KY LKLMS
Sbjct: 437 LVIKRKDGFFKLFLRCYKKTS-RINNWSIGVKYTLKLMS 474


>U41039-3|AAK68627.2|  537|Caenorhabditis elegans Synapse defective
           protein 9, isoformc protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 106 KPAPERRRRIGSLRNSL*VYLNSNADVKTQAA 11
           KPAPE+     SL N L V  N+  ++K Q A
Sbjct: 407 KPAPEQPVNASSLHNELRVISNAICELKAQQA 438


>Z30423-10|CAA83014.1|  216|Caenorhabditis elegans Hypothetical
           protein T20G5.12 protein.
          Length = 216

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 75  PILRLRSGAGFEHDQCCSRAQVE 143
           P ++  +  G +H QCCS++QV+
Sbjct: 129 PEMQFCAAQGKDHSQCCSQSQVD 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,507,592
Number of Sequences: 27780
Number of extensions: 156256
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)