Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0208
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 31 0.17
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 1.2
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 27 2.1
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 26 3.6
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 26 4.8
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 6.3
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.3
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 8.4
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha... 25 8.4
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.4
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +1
Query: 46 DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 168
+K+ VV EK P + T E PSE Y+ EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 85 PDSMATITMKPEYPPSEVYSTSEPPP 162
P +T + P PP+ STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 85 PDSMATITMKPEYPPSEVYSTSEPPP 162
P +T + P PP+ STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 73 KEHQPDSMATITMKPEYPPSEVYSTS 150
+ + DS +TI +PEYPP +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 297 ADGMMNELLPNSKPNKGSQDEGGSD 223
A+ + N+L N PNK +EG +D
Sbjct: 318 ANSVHNQLAANEFPNKSQSEEGSND 342
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -3
Query: 152 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 63
S V +G Y+GFIV++A+ S F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 132 RRRIFRLHSYCSHRVWLVFFFHHDLILFIKIYL 34
RRRIFR H +W+ FF L++ +IY+
Sbjct: 32 RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 82 QPDSMATITMKPEYPPSEVYSTSEPP 159
QP + +T+ P PPS Y+T++PP
Sbjct: 86 QPGNASTMYASP--PPSSNYNTAKPP 109
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 118 EYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILGT 249
E+ + + S PP + + STSV A A+ +V S+ LG+
Sbjct: 215 EHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLVKSTSDLGS 258
>SPCC16C4.08c |skb15||Shk1 kinase binding protein
15|Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +1
Query: 73 KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYR 171
K DS + T SE YSTS+ PP R
Sbjct: 305 KRQSLDSETSETSSESESESEYYSTSKQPPVKR 337
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 112 KPEYPPSEVYSTSEPPPAYRHRVS 183
K Y P++ +T + PP Y H VS
Sbjct: 201 KGRYYPNKALATDKDPPLYLHIVS 224
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,962
Number of Sequences: 5004
Number of extensions: 44452
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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