Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0208
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1060 - 25752181-25754229 31 0.53
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 29 2.8
12_02_1197 + 26915933-26916298 28 4.9
10_06_0134 - 11090065-11091639 28 4.9
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497... 28 4.9
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 28 6.5
08_02_0365 - 16271106-16271327,16271504-16272241,16273034-16273120 28 6.5
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 28 6.5
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 28 6.5
03_02_0383 + 7966929-7968951,7969085-7969104 28 6.5
02_01_0051 - 385738-385968,386439-386864 27 8.6
>12_02_1060 - 25752181-25754229
Length = 682
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 154 PPPAYRHRVSTSVQIAKIAALTVVASSF--ILGTFIWL 261
PPPA SV I +A LTV A SF +LG IWL
Sbjct: 265 PPPAPPAPPPPSVSIGLVAGLTVGAVSFVVVLGVSIWL 302
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 109 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 195
M P PP +++ PPP + H +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 79 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 189
H+ D+ A T T+ PPSE + PPPA +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281
>12_02_1197 + 26915933-26916298
Length = 121
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 158 GGSDVLYTSEGGYSGFIVIVAIESGW 81
GG DVL + GG +++VA ES W
Sbjct: 3 GGEDVLVVAPGGGRDALLLVAQESAW 28
>10_06_0134 - 11090065-11091639
Length = 524
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 585 SHHSSLVSHSYRRQXSAICLRFILDSHV*VRRL 487
SHH S H+Y SA C+ I D + +R L
Sbjct: 80 SHHDSHSDHTYNSPPSASCVTEITDLQIKLREL 112
>02_05_1006 +
33448476-33448915,33449016-33449083,33449681-33449751,
33449905-33450156,33450473-33450636,33450731-33450773,
33451044-33451161,33451384-33451481,33451550-33451594
Length = 432
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 102 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 22
C H+ WL + HH++ ILF+K L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430
>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -2
Query: 144 AVYF-RRRIFRLHSYCSHRVWLV 79
AV+F R++ RLH +CSH V+++
Sbjct: 1233 AVHFPNRKMRRLHEFCSHSVFVI 1255
>08_02_0365 - 16271106-16271327,16271504-16272241,16273034-16273120
Length = 348
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 381 AHPLPG-HHFRRLCLPKRVLCRALHPAALADGMMNELLPNSKPNKGSQDEGG 229
A P+P FRR+ + CR LH A AD + EL+ + KG GG
Sbjct: 2 AKPVPVCRGFRRIIFARAAFCRELHLAKEAD--LGELVSSGVLVKGQGSCGG 51
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +3
Query: 198 REDCSTNSGRFLLHLGNLYLASSWVAA 278
R CS + GR LL L L +A SWVAA
Sbjct: 2 RRRCSGSHGRQLLLLYWLVIACSWVAA 28
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 201 EDCSTNSGRFLLHLGNL 251
EDC G FL HLGNL
Sbjct: 574 EDCDITGGYFLKHLGNL 590
>03_02_0383 + 7966929-7968951,7969085-7969104
Length = 680
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 163 AYRHRVSTSVQIAKIAALTVVASSFILGTFIWLRVG 270
A RH ++V A + +V + LG F+WLR G
Sbjct: 32 ARRHAAGSAVGAGVAAVVALVLVALGLGLFVWLRRG 67
>02_01_0051 - 385738-385968,386439-386864
Length = 218
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +1
Query: 82 QPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASSFILG 246
QP + A PE PP + PPPA + + ++A A + + F+ G
Sbjct: 82 QPAAAAAAAEDPEKPPVQEADPPPPPPALVYS-AAGTKLAGAAECAICLAEFVDG 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,879
Number of Sequences: 37544
Number of extensions: 349837
Number of successful extensions: 1130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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