Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0208
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 33 0.23
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85) 29 2.2
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07) 28 6.6
SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10) 28 6.6
SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10) 28 6.6
SB_14949| Best HMM Match : F5_F8_type_C (HMM E-Value=4.6e-06) 27 8.7
SB_38342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 32.7 bits (71), Expect = 0.23
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = +3
Query: 267 WVAARSSCHQLEQLDAMLDK------ELALEGRAYGNDALVADEPLPLANAHALHGVPPM 428
W ARS+ + E+LD + +K +L LEG G +PL N + + + M
Sbjct: 336 WCNARSNAKEREELDRLFEKYVPASVDLILEGILDGKQGKKLKTIIPLTNLNMVEQLSHM 395
Query: 429 LSSVLP 446
L ++LP
Sbjct: 396 LDALLP 401
>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1938
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 189 GPDREDCSTNSGRFLLHLGNLYLASSWVAARSSCHQLEQLD 311
G R S+N G + G LY SSW ++ S+ ++ Q+D
Sbjct: 509 GVQRMTSSSNDGAYTASAGRLYGGSSWCSSTSANNEYLQVD 549
>SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)
Length = 203
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +1
Query: 373 RMSLCH*QMPTLC-MEYRPCCLQCYLRXASRHLXDPXSSKTTHSNMRVQNKTKT 531
R+ + H + LC M + CC C+ R H+ THS+ V +T+T
Sbjct: 103 RIVVLHDTLALLCYMSHSHCCATCHTRTVVLHVTLALLCYMTHSHCCVTCRTRT 156
>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2371
Score = 29.1 bits (62), Expect = 2.9
Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Frame = +3
Query: 99 YNNYEA-GISAF*SIQHIRTATGLSAQGVNFGPDREDCSTNSGRFLLHLGNLYLASSWVA 275
YN ++A I F Q G+ QG+ S G G LY SSW +
Sbjct: 157 YNRFKALRIELFGFCQDCTQPLGMENQGI-LSTAMTSSSEIDGSHSASAGRLYGGSSWCS 215
Query: 276 ARSSCHQLEQLD 311
A SS + Q+D
Sbjct: 216 ATSSSSEYLQVD 227
>SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 85 PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 183
PD AT + PEY + +PPP Y ++
Sbjct: 28 PDMPATFQIPPEYTVEDPIKIDQPPPPYMDTIT 60
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 73 KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 195
+ H P S + T +P PP +T++ PPAY R S ++Q
Sbjct: 91 RPHTPPSCQSNTPRPLTPPPRQSNTTQ-PPAYPPRQSYALQ 130
>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
Length = 778
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/83 (26%), Positives = 32/83 (38%)
Frame = -2
Query: 594 TQDSHHSSLVSHSYRRQXSAICLRFILDSHV*VRRL*RXWVXKMTAGSSQVTLKTAWAVL 415
T++ L Y R+ S I +F+ SH+ V + +T T +
Sbjct: 292 TEEFKSGYLTEKGYNRKKSKILKKFLNTSHIMEHN--NTNVSHYNGPNQTMTYNTRHLMS 349
Query: 414 HAKRGHLLVAKAHPLPGHHFRRL 346
H R HL+ K H L H R L
Sbjct: 350 HNTR-HLMSHKTHHLMSHKTRHL 371
>SB_57991| Best HMM Match : rve (HMM E-Value=1.1e-10)
Length = 314
Score = 27.9 bits (59), Expect = 6.6
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +3
Query: 222 GRFLLHL-GNLYLASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLAN 398
G F HL G + A S RS + E DA+LD E + R DEP+ N
Sbjct: 127 GGFFEHLVGVMKNALSKAVGRSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPN 186
Query: 399 AHALHGVP-PMLSSVLPEXS 455
L G P P+L L + S
Sbjct: 187 L-LLRGRPVPILEEDLEKLS 205
>SB_45156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 27.9 bits (59), Expect = 6.6
Identities = 27/80 (33%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +3
Query: 222 GRFLLHL-GNLYLASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLAN 398
G F HL G + A S RS + E DA+LD E + R DEP+ N
Sbjct: 168 GGFFEHLVGVMKNALSKAVGRSLLNYCELEDALLDVETVMNNRPLVYQGEEFDEPVITPN 227
Query: 399 AHALHGVP-PMLSSVLPEXS 455
L G P P+L L + S
Sbjct: 228 L-LLRGRPVPILEEDLEKLS 246
>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
Length = 1029
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +1
Query: 61 VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIA 201
V++ + P +I +PE P + ++S PP +V++S Q +
Sbjct: 514 VMLSTQQMPSPNTSIKQEPESPNTCIFSQQPPPQPAIKKVASSPQFS 560
>SB_14949| Best HMM Match : F5_F8_type_C (HMM E-Value=4.6e-06)
Length = 146
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 210 STNSGRFLLHLGNLYLASSWVAARSSCHQLEQLD 311
S+N+G + G LY SSW ++ S+ + Q+D
Sbjct: 68 SSNAGAYTASAGRLYGGSSWCSSTSANTEYLQVD 101
>SB_38342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 115 PEYPPSEVYSTSEPPPAY 168
P++PP + Y T +PP Y
Sbjct: 29 PQHPPQQFYPTQQPPAQY 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,744,261
Number of Sequences: 59808
Number of extensions: 356116
Number of successful extensions: 1010
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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