Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0208
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK097411-1|BAC05040.1|  656|Homo sapiens protein ( Homo sapiens ...    31   2.3  
BC011375-1|AAH11375.1|  989|Homo sapiens THRAP4 protein protein.       31   4.1  
AF277379-1|AAF78764.1|  989|Homo sapiens vitamin D receptor-inte...    31   4.1  
AF055995-1|AAC39855.1|  989|Homo sapiens thyroid hormone recepto...    31   4.1  
AF451983-1|AAP97681.1|  283|Homo sapiens hepatoma-derived growth...    29   9.5  

>AK097411-1|BAC05040.1|  656|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40092 fis, clone TESTI2003756. ).
          Length = 656

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 91  SMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASS 234
           S A ++ K   PP  ++S+S+P PA  +    + Q+  +   T  A+S
Sbjct: 28  STAPVSGKKHRPPGPLFSSSDPLPATSYHSRDTAQVTSLIPATFTAAS 75



 Score = 31.5 bits (68), Expect = 2.3
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 91  SMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVASS 234
           S A ++ K   PP  ++S+S+P PA       S Q+  +   T  A+S
Sbjct: 299 STAPVSGKKHRPPGPLFSSSDPLPATSSHSRDSAQVTSLIPATFTAAS 346


>BC011375-1|AAH11375.1|  989|Homo sapiens THRAP4 protein protein.
          Length = 989

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +3

Query: 210 STNSGRFLLHLGNLYLASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLP 389
           S+   R LLH+  L  ASSW A   S  +L ++ A L     L  +A     L+   P  
Sbjct: 170 SSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNP-QLRSQAEQCGTLIRSIPTM 228

Query: 390 LA-NAHALH--GVPPMLSSVLPE 449
           L+ +A  +H  G P + + +L E
Sbjct: 229 LSVHAEQMHKTGFPTVHAVILLE 251


>AF277379-1|AAF78764.1|  989|Homo sapiens vitamin D
           receptor-interacting protein complex component DRIP100
           protein.
          Length = 989

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +3

Query: 210 STNSGRFLLHLGNLYLASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLP 389
           S+   R LLH+  L  ASSW A   S  +L ++ A L     L  +A     L+   P  
Sbjct: 170 SSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNP-QLRSQAEQCGTLIRSIPTM 228

Query: 390 LA-NAHALH--GVPPMLSSVLPE 449
           L+ +A  +H  G P + + +L E
Sbjct: 229 LSVHAEQMHKTGFPTVHAVILLE 251


>AF055995-1|AAC39855.1|  989|Homo sapiens thyroid hormone
           receptor-associated protein complex component TRAP100
           protein.
          Length = 989

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = +3

Query: 210 STNSGRFLLHLGNLYLASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLP 389
           S+   R LLH+  L  ASSW A   S  +L ++ A L     L  +A     L+   P  
Sbjct: 170 SSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNP-QLRSQAEQCGTLIRSIPTM 228

Query: 390 LA-NAHALH--GVPPMLSSVLPE 449
           L+ +A  +H  G P + + +L E
Sbjct: 229 LSVHAEQMHKTGFPTVHAVILLE 251


>AF451983-1|AAP97681.1|  283|Homo sapiens hepatoma-derived growth
           factor 4a protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 73  KEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 168
           +E +P+ M  +  +PE P +E     EP PAY
Sbjct: 120 QELEPEFMPELEAEPEMPETECEQEPEPQPAY 151


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,056,655
Number of Sequences: 237096
Number of extensions: 1732020
Number of successful extensions: 4413
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4412
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)