Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0208
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62010.1 68416.m06964 expressed protein                             31   0.58 
At1g01440.1 68414.m00059 extra-large G-protein-related weak simi...    31   0.58 
At2g11620.1 68415.m01249 hypothetical protein                          31   0.77 
At5g03540.1 68418.m00310 exocyst subunit EXO70 family protein co...    29   1.8  
At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1 ...    29   3.1  
At3g47620.1 68416.m05184 TCP family transcription factor, putati...    28   5.4  
At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family...    27   7.2  
At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger) fa...    27   9.5  
At4g12080.1 68417.m01920 DNA-binding family protein contains a A...    27   9.5  
At3g45800.1 68416.m04957 hypothetical protein                          27   9.5  
At3g19070.1 68416.m02422 cell wall protein-related similar to ve...    27   9.5  

>At3g62010.1 68416.m06964 expressed protein
          Length = 1254

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 294 QLEQLDAMLDKELALEGRAYGNDALVADE 380
           ++EQ++A L +++ +E   YGN  LV DE
Sbjct: 124 RVEQMEARLKEDILMEASRYGNKILVTDE 152


>At1g01440.1 68414.m00059 extra-large G-protein-related weak
           similarity to extra-large G-protein  (AtXLG1)
           (GI:3201682) [Arabidopsis thaliana]
          Length = 664

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +3

Query: 297 LEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHALHGVPPMLSSVLPE 449
           L +LD++ D  L    R  GN+A V D+P P+   HA HG PP   +  PE
Sbjct: 89  LRKLDSIKDHLL----RGGGNNATVVDQP-PMG-FHAHHGPPPSYYNPYPE 133


>At2g11620.1 68415.m01249 hypothetical protein 
          Length = 491

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 64  VMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 183
           V+  +   + M  + MKPE PP ++Y   +P P  +   S
Sbjct: 253 VLRYDGNNNGMQGVLMKPEKPPQDLYGQCQPQPQIQRNFS 292


>At5g03540.1 68418.m00310 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 638

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = -2

Query: 450 SQVTLKTAWAVLHAKRGHLLVAKAHPLPGHHFRRLCLPKRVLCRALHPAALADGMMNELL 271
           S  + K++  VL+    + L+AKA       F++L        +A+ P  L DG+ N L 
Sbjct: 117 SNKSFKSSDGVLN--HANSLLAKAQSKLEEEFKQLLAS---YSKAVEPDRLFDGLPNSLR 171

Query: 270 PNSKPNKGSQDEGG 229
           P+S  + G +  GG
Sbjct: 172 PSSDGDGGGKPHGG 185


>At4g20370.1 68417.m02973 twin sister of FT protein (TSF) / TFL1
           like protein identical to SP|Q9S7R5 TWIN SISTER of FT
           protein (TFL1 like protein) {Arabidopsis thaliana};
           contains Pfam profile PF01161:
           Phosphatidylethanolamine-binding protein
          Length = 175

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 270 VAARSSCHQLEQLDAMLDKELALEGRAYGNDALVADEPLPLANAHAL 410
           V + S+ HQ E L  ++    A  G A+GN+ +  + P P +  H +
Sbjct: 74  VPSPSNPHQREYLHWLVTDIPATTGNAFGNEVVCYESPRPPSGIHRI 120


>At3g47620.1 68416.m05184 TCP family transcription factor, putative
           auxin-induced basic helix-loop-helix transcription
           factor - Gossypium hirsutum, EMBL:AF165924
          Length = 489

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -2

Query: 441 TLKTAWAVLHAKRGHLLVAKAHPLPGHHFRRLCLPKRVLCRALHPAALADGMMNELLPNS 262
           ++ TA A L+ + G   V       G HF     P   L      A  ++  +NE   +S
Sbjct: 372 SINTAAAALY-RSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINE---DS 427

Query: 261 KPNKGSQDEGGSDH 220
             N+G + +GG DH
Sbjct: 428 NNNEGGRSDGGGDH 441


>At5g57070.1 68418.m07124 hydroxyproline-rich glycoprotein family
           protein Common family members: At5g26070, At5g19800,
           At1g72790 [Arabidopsis thaliana]
          Length = 575

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 64  VMEKEHQPDSMA--TITMKPEYPPSEVYSTSEPPP 162
           + E+E +P  +   T  +KP  PP +  +T  PPP
Sbjct: 222 IEEEESEPKEIQIDTFVVKPSSPPQQPPATPPPPP 256


>At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 375

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = +1

Query: 154 PPPAYRHRVS---TSVQIAKIAALTVVASSFILGTF 252
           PPP   HR S   TS  I  +A + ++A++F+L ++
Sbjct: 19  PPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSY 54


>At4g12080.1 68417.m01920 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 356

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 255 LASSWVAARSSCHQLEQLDAMLDKELALEGRAYGNDA-LVADEPLPLANAHALHGVPPML 431
           L  S V   ++   +E +   L K+     R YG D  +VA  P P+++A A   +PP  
Sbjct: 66  LQISTVTTTTTTAAMEGISGGLMKKKRGRPRKYGPDGTVVALSPKPISSAPAPSHLPPPS 125

Query: 432 SSVL 443
           S V+
Sbjct: 126 SHVI 129


>At3g45800.1 68416.m04957 hypothetical protein
          Length = 563

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 109 MKPEYPPSEVYSTSEPPP 162
           MKPE PP ++Y   +P P
Sbjct: 458 MKPEKPPQDLYGQCQPQP 475


>At3g19070.1 68416.m02422 cell wall protein-related similar to
           vegetative cell wall protein gp1 [Chlamydomonas
           reinhardtii] gi|12018147|gb|AAG45420;
          Length = 346

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +1

Query: 79  HQPDSMATITMKPE---YPPSEVYSTSEPPPAYRHRVSTSVQIA--KIAALTVVASSF 237
           HQP S +T+         PPS   S+ +PP + R   ++SV  +    ++ T+  SSF
Sbjct: 113 HQPPSSSTLATSSSPSLQPPSMSSSSLQPPASLREFFTSSVSYSHQPSSSSTLATSSF 170


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,803
Number of Sequences: 28952
Number of extensions: 253518
Number of successful extensions: 1186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)