Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0206
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0) 85 3e-17
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34) 53 2e-07
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22) 52 4e-07
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31) 49 3e-06
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32) 44 7e-05
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031) 44 9e-05
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28) 44 1e-04
SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 43 2e-04
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 43 2e-04
SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22) 43 2e-04
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 9e-04
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26) 40 0.001
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021) 40 0.002
SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08) 38 0.005
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 37 0.011
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24) 37 0.011
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 34 0.076
SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094) 33 0.13
SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10) 31 0.53
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08) 31 0.71
SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16) 29 2.2
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 29 2.2
SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05) 29 2.2
SB_8304| Best HMM Match : PLAT (HMM E-Value=0) 29 2.2
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_13669| Best HMM Match : zf-CCHC (HMM E-Value=1.3e-06) 29 2.9
SB_24581| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07) 29 2.9
SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07) 29 2.9
SB_56918| Best HMM Match : zf-CCHC (HMM E-Value=7.4e-07) 29 3.8
SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3) 29 3.8
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_38316| Best HMM Match : Syja_N (HMM E-Value=0.00032) 27 8.7
>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
Length = 783
Score = 85.4 bits (202), Expect = 3e-17
Identities = 36/61 (59%), Positives = 49/61 (80%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKPTKRK 269
D NAPKR +A+MLWLN+ R++I ++NPGI VTEV+K AGE+W++L DKS+WEEK K
Sbjct: 538 DPNAPKRAMSAYMLWLNDTRQEIKDKNPGISVTEVSKVAGEMWKNLTDKSKWEEKAAIEK 597
Query: 270 K 272
+
Sbjct: 598 Q 598
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRKKNT 278
KRP AFM+W E R+KI +ENP + +E++KR G W+ L DK + E+ K +
Sbjct: 328 KRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAKKLRAQH 387
Query: 279 MPQ 287
M +
Sbjct: 388 MKE 390
>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
Length = 179
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRKKNT 278
KRP AFM+W E R+KI +ENP + +E++KR G W+ L DK + E+ K +
Sbjct: 11 KRPMNAFMVWSREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAKKLRAQH 70
Query: 279 MPQ 287
M +
Sbjct: 71 MKE 73
>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
Length = 523
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTK 263
DVNAPK P T ++ +LNE+R+K+ ENP + EV + G +W L K + E+ K
Sbjct: 173 DVNAPKAPLTGYVRFLNEHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAEK 232
Query: 264 RKKNTMPQ 287
K+ M +
Sbjct: 233 DKERYMKE 240
>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1099
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/51 (43%), Positives = 34/51 (66%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKP 257
KRP AFM+W E R+K+ ++NP + +E++KR G W+ L SE E++P
Sbjct: 790 KRPMNAFMVWSRERRRKMAQDNPKMHNSEISKRLGSEWKLL---SEQEKRP 837
>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
Length = 367
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRKKNT 278
KRP +FM+W R+K EENP + E++K G+ W +L KDK + EK + +
Sbjct: 95 KRPMNSFMIWAKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAERLRIRH 154
Query: 279 MPQ 287
M +
Sbjct: 155 MKE 157
>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKP 257
D+ KRP AFM+W R+K+ EE+P + E++KR G+ W+ L SE E++P
Sbjct: 41 DMQHVKRPMNAFMVWSQIERRKMAEEHPDMHNAEISKRLGKRWKLL---SESEKRP 93
>SB_40969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEK 254
KRP FM+W E R +I++ENPGI ++K G W+ L ++K + EK
Sbjct: 9 KRPMNCFMVWSREKRCQILQENPGINNARLSKLLGMAWKKLSVEEKEPYIEK 60
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLK--DKSEWEEKPTK 263
D NAPK P T ++ +LNE R+K+ E+P + EV K G W + DK + + +
Sbjct: 140 DTNAPKAPLTGYVQFLNEQREKVRSEHPELPFPEVTKILGAEWSKMSQDDKQRYLDDAER 199
Query: 264 RKK 272
K+
Sbjct: 200 DKE 202
>SB_53304| Best HMM Match : HMG_box (HMM E-Value=1.9e-32)
Length = 398
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKP 257
KRP AFM+W R+K+ ++ P + E++K G+LW+ L D E+KP
Sbjct: 65 KRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWKLLNDS---EKKP 112
>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
Length = 406
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 123 FMLWLNENRKKIIEENPGIKVTEVAKRAGELWR--DLKDKSEWEEK 254
F LWL ENR +I EENP I +V K A + W+ D +K W EK
Sbjct: 336 FSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVWNEK 381
>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
Length = 245
Score = 43.6 bits (98), Expect = 1e-04
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
KRP +FM+W E R+ + ENP ++ E++K G+ WR + + +
Sbjct: 11 KRPLNSFMVWAKEKRRAMNRENPKMRNAEISKILGDEWRKMPESEK 56
>SB_15122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL 227
KRP +FM+W R+K+ E+ P + E++K G+LWR L
Sbjct: 112 KRPMNSFMVWAQSARRKLAEQYPHVHNAELSKMLGKLWRML 152
>SB_25642| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 267
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL 227
KRP AFM+W ++ R+++ ENP + ++++K G WR L
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL 227
KRP AFM+W ++ R+++ ENP + ++++K G WR L
Sbjct: 8 KRPMNAFMIWSSKKRRQLAAENPKLHNSQISKMLGTEWRKL 48
>SB_1832| Best HMM Match : HMG_box (HMM E-Value=1.7e-22)
Length = 299
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKD--KSEWEEKPTK 263
D N PK P T++ + ++R K+ ++ P +K TE+A + + WR + + K + E+ +
Sbjct: 148 DPNQPKMPLTSYFRYCQKHRAKLAKKYPNLKSTELAAKLSKKWRKMSEERKKAYTEQYEE 207
Query: 264 RKK 272
KK
Sbjct: 208 EKK 210
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +3
Query: 111 PATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEW--EEKPTKRK 269
P +AF LW N+ RK ++ NP I ++ K+ W+++ K K W +EK RK
Sbjct: 230 PLSAFELWANQARKDLLVSNPDISAKKLKKKLKRKWKEIDEKGKKTWIKKEKTEMRK 286
>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 384
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
KRP AFM+W +R I + P E++ R GE+W DL + +
Sbjct: 102 KRPMNAFMIWARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQ 147
>SB_31139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDK 236
D N KRP AFM+W E R+ +E P + +E++K G W+ +KD+
Sbjct: 5 DANHVKRPMNAFMVWSKERRRIKSQECPRMHNSEISKILGCEWKAMKDE 53
>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL 227
KRP A+M+W + R++I EE P + +E++KR G W L
Sbjct: 9 KRPMNAYMVWSRKERRRIAEECPRMLNSEISKRLGLEWNSL 49
>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTK 263
D N PKR +A+ ++N R + ++NP ++K GE+W + DK+++++ K
Sbjct: 98 DPNKPKRCLSAYFHFINLKRDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQYQDMAKK 157
Query: 264 RKKNTMPQ*RSIKTAARPTSSN 329
K + ++ K P N
Sbjct: 158 DKVRYESEMKAFKDGKLPAKQN 179
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTK 263
D N PK +A+ +L + R+K+ E + + +K + E W+++ ++K + +K K
Sbjct: 8 DPNKPKGAKSAYNFFLQDQREKLQREEGKFSLADFSKVSAEKWKNMSEEEKETFVQKAGK 67
Query: 264 RKK 272
K+
Sbjct: 68 DKE 70
>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
Length = 245
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRKK 272
KRP AF+LW + R+ I ENP + +++++ G W+ L ++K+ + E+ K K+
Sbjct: 20 KRPLNAFILWSKKRRRVIANENPQMHNFDISRKLGLEWQKLTEEEKAYYFEEAKKLKE 77
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL 227
KRP AFM+W R+++ + NP + E++K G WR L
Sbjct: 367 KRPMNAFMVWAQVERRRLADANPELHNAELSKMLGLTWRAL 407
>SB_57274| Best HMM Match : HMG_box (HMM E-Value=0.021)
Length = 200
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +3
Query: 123 FMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEK 254
F LWL ENR +I EENP I +V K A + W+ L + EK
Sbjct: 43 FSLWLEENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKLEK 86
>SB_2908| Best HMM Match : HMG_box (HMM E-Value=1.5e-08)
Length = 324
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +3
Query: 102 PKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEE 251
P++P +M + + ++ +NP K+ ++ K G++WRDL D + +E
Sbjct: 28 PEKPLMPYMRYSRKVWDQVKNQNPDFKLWDIGKIIGQMWRDLDDAEKQQE 77
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 93 VNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKD 233
+N PK+P TAF+ +L R+ G +T+ +R E WRD+ D
Sbjct: 472 LNFPKKPGTAFIYFLTMERES-FPRREGEGITQWTQRMAETWRDMSD 517
Score = 35.5 bits (78), Expect = 0.033
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLK 230
KRP AF + + K+ EENP +K E+ K + W +L+
Sbjct: 307 KRPTPAFFRFRQDYADKVKEENPHLKDAEIRKHLSDQWANLE 348
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 37.1 bits (82), Expect = 0.011
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +3
Query: 102 PKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
P +P +A+ ++ E + I +NP + E+AK G++W +L ++ +
Sbjct: 925 PPKPLSAYQIFFKETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQK 971
>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
Length = 201
Score = 37.1 bits (82), Expect = 0.011
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKP 257
KRP AFM+W R+K+ + P + E++K G W L SE E++P
Sbjct: 10 KRPMNAFMVWSRTERRKLALKYPNMLNCEISKLLGAEWSRL---SEEEKRP 57
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 34.3 bits (75), Expect = 0.076
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEE--NPGIKVTEVAKRAGELWRDLKDKSE 242
D + PKRP TA+ L+L RK++ + G K+ + AGE WR++ D+ +
Sbjct: 573 DPDKPKRPPTAYFLFLAAFRKEMAGKALEDGKKIPSL---AGERWREMSDEDK 622
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEEN-----PGIKVTEVAKRAGELWRDLKDKSE 242
KR ++A++ + ++ R K+ ++ P K EVAK AGE W+ L D+ +
Sbjct: 497 KRASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQK 547
>SB_44844| Best HMM Match : DUF164 (HMM E-Value=0.094)
Length = 332
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +3
Query: 141 ENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKPTKRKKN 275
+N KK +++ P K TE AK+A E W+ LK + W+E+ + K+
Sbjct: 230 KNIKKDLKKLP--KTTEEAKKAEERWQRLKTELNWDERYEETMKD 272
>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
Length = 145
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLK--DKSEWEEK 254
KR + ++L+ +E R I +E+P E+++ GE WR+ K+E+E K
Sbjct: 36 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENK 87
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 31.5 bits (68), Expect = 0.53
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLK--DKSEWEEK 254
KR + ++L+ +E R I +E+P E+++ GE WR+ K+E+E K
Sbjct: 1269 KRGQSGYLLFSHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENK 1320
>SB_16481| Best HMM Match : HMG_box (HMM E-Value=1.2e-08)
Length = 271
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEKPTKRKKNT 278
K P AFM+ RK NPG+ +E +K G W+ L ++K + +P KR + T
Sbjct: 10 KSPMNAFMVCSRGKRKHYASINPGMHNSEFSKSLGPEWKMLTSEEKDPFIAEP-KRLQRT 68
>SB_31771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1963
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/71 (33%), Positives = 32/71 (45%)
Frame = +1
Query: 61 VKRSLRNARRT*TRQSGRRPPSCCGSTKTERKSLKRTPGSRSQRSPSARENSGGT*KTNR 240
V SLR A + T + +T + KR P R+ + R N+GG KTN
Sbjct: 900 VVESLRAAEISRTHRQVISGKPYSSQAETIHHTDKRQPNRRNNQR-KGRGNNGGQQKTNG 958
Query: 241 NGKRNQQSERR 273
N KR Q +RR
Sbjct: 959 N-KRRQTQDRR 968
>SB_7134| Best HMM Match : HMG_box (HMM E-Value=2e-16)
Length = 228
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVT----EVAKRAGELWRDL 227
D NAPK+PA AF ++ + R + E++ E+ K + W +L
Sbjct: 51 DPNAPKKPANAFFMFCQQQRTVMQEDHKDATAVMGHHELTKSLAKEWNNL 100
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 134 AQRKQKENH*REPRDQGHRGRQARGRTLEGPERQIGMGRETNKAKEEYNAAMKKYKDSGA 313
A++K+KE RE R++ R +Q R E R+ KAK E M+K ++
Sbjct: 296 AEKKEKERVEREQREE--RRKQEEKRRAEEQARRKAEEERAAKAKAEMEERMRKLEEKRE 353
Query: 314 AD 319
A+
Sbjct: 354 AE 355
>SB_14329| Best HMM Match : RRM_1 (HMM E-Value=3.5e-05)
Length = 365
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +2
Query: 158 H*REPRDQGHRGRQARGRTLE----GPERQIGMGRETNKAKEEYNAAMKKYKD 304
H + P GH G AR +TLE +RQ G T++ K + ++ KD
Sbjct: 285 HCQNPAQGGHHGADARPQTLEELVAWSKRQTGGSTSTSEVKNSKKTSNEQVKD 337
>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
Length = 1182
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 134 AQRKQKENH*REPRDQGHRGRQARGRTLEGPERQIGMGRETNKAKEEYNAAMKKYKD 304
A++K +E H RE ++ R A+G+ E E++ E +A++E + KD
Sbjct: 906 AEKKDEERHLREEEEERQRKEAAKGKK-EEEEKKEKEAEERRRAEDEERIKKQAEKD 961
>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3038
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 61 VKRSLRNARRT*TRQSGRRPPSCCGSTKTERKSLKRTPGSRS-QRSPSARE-NSGGT*KT 234
V SLR A + T + T+T + KR P R+ QR N+GG KT
Sbjct: 2083 VVESLRAAEISRTHRQVISGKPYSSQTETIHHTDKRQPNRRNNQRKGRGNNGNNGGQQKT 2142
Query: 235 NRNGKRNQQSERR 273
N N KR Q +RR
Sbjct: 2143 NGN-KRRQTQDRR 2154
>SB_13669| Best HMM Match : zf-CCHC (HMM E-Value=1.3e-06)
Length = 385
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 61 VKRSLRNARRT*TRQSGRRPPSCCGSTKTERKSLKRTPGSRS-QRSPSARE-NSGGT*KT 234
V SLR A + T + T+T + KR P R+ QR N+GG KT
Sbjct: 169 VVESLRAAEISRTHRQVISGKPYSSQTETIHHTDKRQPNRRNNQRKGRGNNGNNGGQQKT 228
Query: 235 NRNGKRNQQSERR 273
N N KR Q +RR
Sbjct: 229 NGN-KRRQTQDRR 240
>SB_24581| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
Length = 469
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 163 KRTPGSRSQRSPSARENSGGT*KTNRNGKRNQQSER 270
KR P R+ + R N+GG KTN N +R Q R
Sbjct: 192 KRQPNRRNNKR-KGRGNNGGQQKTNGNQRRQTQDRR 226
>SB_4864| Best HMM Match : zf-CCHC (HMM E-Value=6.9e-07)
Length = 426
Score = 29.1 bits (62), Expect = 2.9
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = +1
Query: 61 VKRSLRNARRT*TRQSGRRPPSCCGSTKTERKSLKRTPGSRS-QRSPSARE-NSGGT*KT 234
V SLR A + T + T+T + KR P R+ QR N+GG KT
Sbjct: 169 VVESLRAAEISRTHRQVISGKPYSSQTETIHHTDKRQPNRRNNQRKGRGNNGNNGGQQKT 228
Query: 235 NRNGKRNQQSERR 273
N N KR Q +RR
Sbjct: 229 NGN-KRRQTQDRR 240
>SB_56918| Best HMM Match : zf-CCHC (HMM E-Value=7.4e-07)
Length = 517
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +1
Query: 61 VKRSLRNARRT*TRQSGRRPPSCCGSTKTERKSLKRTPGSRSQRSPSARENSGGT*KTNR 240
V SLR A + T + +T + KR P R+ + R N+GG KTN
Sbjct: 33 VVESLRAAEISRTHRQVISGKPYSSQAETIHHTDKRQPNRRNNQR-KGRGNNGGQQKTNG 91
Query: 241 NGKRNQQSER 270
N +R Q R
Sbjct: 92 NKRRQTQYRR 101
>SB_46816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1165
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +1
Query: 61 VKRSLRNARRT*TRQSGRRPPSCCGSTKTERKSLKRTPGSRSQRSPSARENSGGT*KTNR 240
V SLR A + T + +T + KR P R+ + R N+GG KTN
Sbjct: 169 VVESLRAAEISRTHRQVISGKPYSSQAETIHHTDKRQPNRRNNQR-KGRGNNGGQQKTNG 227
Query: 241 NGKRNQQSER 270
N +R Q R
Sbjct: 228 NKRRQTQYRR 237
>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
Length = 660
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 118 PPSCCGSTKTERKSLKRTPGSRSQRSPSARENSGGT*KTNRNGKRNQQSERRIQ 279
PPS + ++ S RTP + + S+R ++GG KT + K+ + R Q
Sbjct: 565 PPSRTSTPRSRAGSRTRTPPTPTSSRASSRGSAGGGAKTTKTTKKCSTRKSRGQ 618
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 191 GRQARGRTLEGPERQIGMGRETNKAKEEYNAAMKKYKDSGAADE 322
GR +RG +G ++ +G GR ++ + A M ++ ADE
Sbjct: 1108 GRGSRGPRRKGLDKMLGRGRHRESQEQLHEAMMDTTSNAAWADE 1151
>SB_57835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.9 bits (59), Expect = 6.6
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = +1
Query: 61 VKRSLRNARRT*TRQSGRRPPSCCGSTKTERKSLKRTPGSRS-QRSPSARE-NSGGT*KT 234
V SLR A + T + +T + KR P R+ QR N+GG KT
Sbjct: 169 VVESLRAAEISRTHRQVISGKPYSSQAETIHHTDKRQPNRRNNQRKGRGNNGNNGGQQKT 228
Query: 235 NRNGKRNQQSERRIQ 279
N N KR Q +RR Q
Sbjct: 229 NGN-KRRQTQDRRHQ 242
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 138 NENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKPTKRKKNTMPQ*RSIKTAARP 317
NE R+ EE K E + W LKD++ + T RK +P R +RP
Sbjct: 100 NEERRLAFEERKRQKEAEEKLK----WETLKDQTAKQRPGTGRKLPIVPTSRPSSAQSRP 155
Query: 318 T 320
T
Sbjct: 156 T 156
>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1202
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 105 KRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELW 218
+RP AFM++ +R + +++P V+K GE W
Sbjct: 517 RRPMNAFMIFSKRHRALVHQKHPHQDNRTVSKILGEWW 554
>SB_27095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 534
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 61 VKRSLRNARRT*TRQ-SGRRPPSCCGSTKTERKSLKRTPGSRSQRSPSARENSGGT*KTN 237
+KR+ N RR R+ G+R + + + R S + G R+ + + +
Sbjct: 460 LKRNAYNERRASARERKGKRRRTQGQAQENARASARERKGKRNAHNERKGKRNA---YNE 516
Query: 238 RNGKRNQQSERR 273
R GKRN+ +ER+
Sbjct: 517 RKGKRNEYNERK 528
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 147 RKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKPT 260
+KK+I +P I +TE A R L + +EE PT
Sbjct: 776 KKKVISWSPAIYLTECAHYNKAAERHLVSRPNYEEPPT 813
>SB_38316| Best HMM Match : Syja_N (HMM E-Value=0.00032)
Length = 567
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = +2
Query: 173 RDQGHRGRQARGRTLEGPERQIGMGRETNKAKEEYNAAMKKYKDSGAADE 322
RD + ++ R+ E +R GRE KAK+E N A+K KD+ AA E
Sbjct: 288 RDLAKKQQKQDHRSKESTQRD-PEGRE--KAKQENNGAVKDDKDACAACE 334
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,425,933
Number of Sequences: 59808
Number of extensions: 195892
Number of successful extensions: 781
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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