Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0206
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   1.7  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.2  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 207 GELWRDLKDKSEWEEKPTK 263
           GELW  L+DK  +++  T+
Sbjct: 451 GELWTVLRDKGHFDDGTTR 469


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 117 TAFMLWLNENRKKIIEENPGIKV 185
           T   +W    R K  ++NPG+ V
Sbjct: 50  TQVKIWFQNRRTKWKKQNPGLDV 72


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 203 ALGDLCDLDPGVLFNDFLSV 144
           +LGDL D+  G+L    L+V
Sbjct: 39  SLGDLSDVHTGILIKALLTV 58


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 121 PSCCGSTKTERKSLKRTPGSRSQRSP 198
           P+CCG   +++   +R+  S   R P
Sbjct: 364 PNCCGKWSSQKSEPRRSIYSSLLRYP 389


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 303 SLYFFIAALYSSFALLVSLPIPI 235
           ++Y+ I   ++ F LLVSL I +
Sbjct: 112 NIYYIIILAWALFYLLVSLRIDL 134


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 303 SLYFFIAALYSSFALLVSLPIPI 235
           ++Y+ I   ++ F LLVSL I +
Sbjct: 165 NIYYIIILAWALFYLLVSLRIDL 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,480
Number of Sequences: 438
Number of extensions: 2132
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)