Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0206
(598 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 51 5e-07
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 50 1e-06
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 50 2e-06
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 50 2e-06
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 48 5e-06
At3g28730.1 68416.m03587 structure-specific recognition protein ... 46 1e-05
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 46 1e-05
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 44 1e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 44 1e-04
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 43 2e-04
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 36 0.016
At2g37630.1 68415.m04616 myb family transcription factor (MYB91)... 31 0.77
At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DN... 30 1.0
At1g23660.1 68414.m02984 expressed protein contains Pfam profile... 30 1.0
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca... 30 1.3
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca... 30 1.3
At5g53440.1 68418.m06641 expressed protein 28 4.1
At3g15960.1 68416.m02018 DNA mismatch repair MutS family protein... 28 4.1
At1g23580.1 68414.m02968 expressed protein contains Pfam profile... 28 4.1
At5g59320.1 68418.m07433 lipid transfer protein 3 (LTP3) identic... 28 5.4
At1g23520.1 68414.m02956 expressed protein contains Pfam profile... 28 5.4
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 27 7.2
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 27 7.2
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 27 9.5
At1g71340.1 68414.m08234 glycerophosphoryl diester phosphodieste... 27 9.5
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 51.2 bits (117), Expect = 5e-07
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +3
Query: 102 PKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSEWE-EKPTKRKKNT 278
PK P +AF+++ NE R + EEN V EVAK GE W++L DK + EK K+ K T
Sbjct: 255 PKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKET 312
Query: 279 MPQ 287
Q
Sbjct: 313 YLQ 315
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
D N PK+PA+++ L+ + RKK+ EE PG V W++L ++ +
Sbjct: 375 DPNKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEK 425
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEK 254
D KRP+++++LW + ++ +ENP E + G W+ L +DK +EE+
Sbjct: 134 DCPETKRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEER 190
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDLKD--KSEWEEKPT 260
D N PKRPA+AF +++ + R+ +ENP K V V K AG+ W+ L D K+ + K
Sbjct: 34 DPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAE 93
Query: 261 KRK 269
KRK
Sbjct: 94 KRK 96
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDLK--DKSEWEEKPT 260
D N PKR +AF ++L + R +ENP +K V+ V K G+ W+ + +K+ +EEK
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 261 KRK 269
KRK
Sbjct: 109 KRK 111
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDLK--DKSEWEEKPT 260
D N PKR +AF ++L + R +ENP +K V+ V K G+ W+ + +K+ +EEK
Sbjct: 49 DPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAA 108
Query: 261 KRK 269
KRK
Sbjct: 109 KRK 111
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 48.0 bits (109), Expect = 5e-06
Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
Frame = +3
Query: 102 PKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDL--KDKSEWEEKPTKRKK 272
PK+PATAF +L++ RK+ EENP +K + E+ K GE W+ + ++K ++ + T++++
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKRE 122
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 46.4 bits (105), Expect = 1e-05
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLK--DKSEWEEK 254
D NAPKR + FM + R I +E+PGI EV K G+ WR + DK +E K
Sbjct: 558 DPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAK 614
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDLKD--KSEWEEKPT 260
D N PKRP++AF +++ + R EE+P K V V K GE W+ L D K+ + K
Sbjct: 31 DPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKAD 90
Query: 261 KRK 269
KRK
Sbjct: 91 KRK 93
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +3
Query: 102 PKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKD--KSEWEEKPTKRKK 272
PK+P +A++++ NE R + EN V EVAK AGE W++L + K+ +++ K K+
Sbjct: 246 PKQPISAYLIYANERRAALKGENKS--VIEVAKMAGEEWKNLSEEKKAPYDQMAKKNKE 302
Score = 41.9 bits (94), Expect = 3e-04
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
D N PK+P +++ L+ + RK ++EE+PGI + V W +L ++ +
Sbjct: 368 DPNKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEK 418
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDL--KDKSEWEEK 254
D KRP+T ++LW +N ++ ++NP E + G W+ + ++K +EEK
Sbjct: 125 DCAETKRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEK 181
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDL--KDKSEWEEKPT 260
D N PKRP +AF ++L + RK+ NP K V V K AG W+ + +DK+ + K
Sbjct: 31 DPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKAE 90
Query: 261 KRK 269
RK
Sbjct: 91 SRK 93
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 96 NAPKRPATAFMLWLNENRKKIIEENPGIKVTEVAKRAGELWRDLKDKSE 242
N PKRP TAF +++++ RK E+ G + AK GE W+ L ++ +
Sbjct: 113 NKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEK 161
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 36.3 bits (80), Expect = 0.016
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +3
Query: 90 DVNAPKRPATAFMLWLNENRKKIIEENPGIK-VTEVAKRAGELWRDLKDK 236
D N PK+P + F ++L++ RK+ NP K V V + AG+ W+ + ++
Sbjct: 30 DPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEE 79
>At2g37630.1 68415.m04616 myb family transcription factor (MYB91)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 367
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 150 KKIIEENPGIKVTEVAKRAGELWRDLKDKSEWEEKPTKRK 269
KKI E PG AKR G+ W K+K + EEK + ++
Sbjct: 82 KKIAAEVPG----RTAKRLGKWWEVFKEKQQREEKESNKR 117
>At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DNA
topoisomerase IV subunit A (GI:26454107) [Mycoplasma
penetrans]
Length = 772
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 248 RETNKAKEEYNAAMKKYKDSGAADEF 325
+E ++A EEY+ A+ K KD AA+EF
Sbjct: 727 KEASQAYEEYHEAVHKAKDEQAAEEF 752
>At1g23660.1 68414.m02984 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 264
Score = 30.3 bits (65), Expect = 1.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 198 KRAGELWRDLKDKSEWEEKPTKRKKNT 278
+R GE+WR ++K W + P K K T
Sbjct: 45 RREGEIWRAAEEKHPWYDAPAKVKVTT 71
>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 759
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 251 ETNKAKEEYNAAMKKYKDSGAADEF 325
+ ++A EEY+ A++K KD AA+EF
Sbjct: 716 DASEAYEEYHGAVRKAKDEQAAEEF 740
>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 755
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 251 ETNKAKEEYNAAMKKYKDSGAADEF 325
+ ++A EEY+ A++K KD AA+EF
Sbjct: 712 DASEAYEEYHGAVRKAKDEQAAEEF 736
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 170 PRDQGHRGRQARGRTLEGPERQIGMGRETNKAKEEYNAAMKKYKDSGAADE 322
PR H+ + + T E + + + K+KEE + ++ K+SG+ D+
Sbjct: 2 PRSTRHKSSKHKDATKEYSDSEKETSLKEKKSKEESSTTVRVSKESGSGDK 52
>At3g15960.1 68416.m02018 DNA mismatch repair MutS family protein
contains Pfam profile PF05188: MutS domain II
Length = 474
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 251 ETNKAKEEYNAAMKKYKDSGAADEF 325
E ++A EEY+ ++K+K+ A++EF
Sbjct: 431 EASQAYEEYHVVVRKWKEEQASEEF 455
>At1g23580.1 68414.m02968 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220
Length = 285
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Frame = +3
Query: 120 AFMLWLNENRKKIIEENPGIKVTEVAKRAGEL------WRDLKDKSEWEEK 254
AF W+N+N ++ +EE+P +K A E+ + D+ EWE +
Sbjct: 6 AFGAWINQNSQQPLEEDPKSSEHVESKSASEMDNGPAKMKKYYDEDEWERQ 56
>At5g59320.1 68418.m07433 lipid transfer protein 3 (LTP3) identical
to lipid transfer protein 3 from Arabidopsis thaliana
[gi:8571921]; contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 115
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 103 QSGRRPPSCCGSTKTERKSLKRTP 174
+ G PPSCC KT K TP
Sbjct: 43 KGGLVPPSCCAGVKTLNSMAKTTP 66
>At1g23520.1 68414.m02956 expressed protein contains Pfam profile
PF02713: Domain of unknown function DUF220; expression
supported by MPSS
Length = 263
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 210 ELWRDLKDKSEWEEKPTKRKKNT 278
+LWR + K +WE+ P K K T
Sbjct: 48 KLWRHAEKKEQWEDVPAKVKVET 70
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +3
Query: 162 EENPGIKVTEVAKRAGELWRDLKDKSEWEEKPTKRKKNTMPQ*RSIKTAARPTSSN 329
EEN + T R+ E D+KDKS +E+ KK + + R ++ R TS N
Sbjct: 647 EENKVKRRTRSRSRSVEDSADIKDKSR-DEELKHHKKRSRSRSREDRSKTRDTSRN 701
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 58 SVKRSLRNARRT*TRQSGRRPPSCCGSTKTERKSLKRTPGSRSQRSPSAR 207
S +RS A R+ R PP S+++ R + R P S ++R+ +R
Sbjct: 486 SDQRSRHGAGRSGRSSFARLPPRSLASSRSARGAGSRAPSSSAKRASGSR 535
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 103 QSGRRPPSCCGSTKTERKSLKRTPGSRSQRSPSARENS 216
+S R S S + KSL+R+P + RSP +R S
Sbjct: 220 RSRSRSRSRSKSRSPKAKSLRRSPAKSTSRSPRSRSRS 257
>At1g71340.1 68414.m08234 glycerophosphoryl diester
phosphodiesterase family protein contains Pfam profile
PF03009: Glycerophosphoryl diester phosphodiesterase
family
Length = 328
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 590 RCRFQTPMMPRLGRRTLRFFLIFLGVF 510
R RF +P+ R +RT+ F +IFL +F
Sbjct: 20 RRRFFSPLYSRNFKRTILFAVIFLAIF 46
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,856,451
Number of Sequences: 28952
Number of extensions: 143385
Number of successful extensions: 650
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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