Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0205
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 159 1e-39
SB_54522| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 4e-30
SB_3671| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) 33 0.13
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019) 31 0.71
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37) 29 2.9
SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06) 29 3.8
SB_39385| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-28) 28 5.0
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30) 28 5.0
SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.7
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 159 bits (387), Expect = 1e-39
Identities = 68/76 (89%), Positives = 75/76 (98%)
Frame = +1
Query: 31 EVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRN 210
+VETPLMNM+PGGATAKPFITHHN+LNMDL+MR+APELYHKMLVVGG+DRVYEIGRQFRN
Sbjct: 758 KVETPLMNMIPGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGIDRVYEIGRQFRN 817
Query: 211 EGIDLTHNPEFTTCDF 258
E IDLTHNPEFTTC+F
Sbjct: 818 ESIDLTHNPEFTTCEF 833
Score = 111 bits (266), Expect = 5e-25
Identities = 52/88 (59%), Positives = 65/88 (73%), Gaps = 4/88 (4%)
Frame = +3
Query: 255 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPE----GKEIEIDFTPPFARVP 422
FYMAYADYNDLM ITE+++SGMV++I G YKV YHPE + GK +DFTPPF R+
Sbjct: 833 FYMAYADYNDLMEITETMISGMVKNITGGYKVTYHPEAVDADNLGKSWTVDFTPPFKRLR 892
Query: 423 MMATLERVLNVKLPAPDKLDTPEANDFL 506
M+ LE+VL V+LP+P +TPEAN L
Sbjct: 893 MIPELEKVLGVRLPSPQDFNTPEANKLL 920
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/28 (60%), Positives = 21/28 (75%)
Frame = +2
Query: 512 LCNTHQIECSPXRTTARXLDKLVSVXLE 595
LC H+++C+P RTTAR LDKLV LE
Sbjct: 923 LCVKHEVDCAPPRTTARLLDKLVGEFLE 950
>SB_54522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 128 bits (308), Expect = 4e-30
Identities = 55/60 (91%), Positives = 60/60 (100%)
Frame = +1
Query: 34 VETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNE 213
VETPLMNM+PGGATAKPFITHHN+LNMDL+MR+APELYHKMLVVGG+DRVYEIGRQFRNE
Sbjct: 1 VETPLMNMIPGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGIDRVYEIGRQFRNE 60
>SB_3671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 258 YMAYADYNDLMTITESILSGMVQSIHGS-YKVKYHPEG 368
YMAYADY+DL+ +TES+ + Q + G+ Y+ + G
Sbjct: 100 YMAYADYHDLIELTESLFRTLAQEVLGTGYRARIRNHG 137
>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
Length = 479
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 121 YMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDL-THNPEFTTCD 255
++ +P+LY +M + G D+VY IG FR E + H EF D
Sbjct: 252 FLAQSPQLYKQMALTGDFDKVYTIGSVFRAEDSNTHRHLTEFIGLD 297
>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
Length = 448
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 339 SYKVKYHPEGPEGKEIEIDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEAND 500
S +V +HP P+ +E+ F PP + + + ++ +++ DK D + ND
Sbjct: 365 SVEVTFHPSNPKCDSVEVHFHPPNPKCDSVEVMTKM--IRVIDDDKNDDDDYND 416
>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
Length = 399
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 273 DYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDF 398
DY D++ +T S ++ + +KYHP+ + E+ F
Sbjct: 4 DYYDILGLTRSATDADIKKEYRKLSLKYHPDKNQEPSAEVKF 45
>SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06)
Length = 416
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 19 MGFLEVETPLMNMVPG--GATAKPFITHH 99
MG +EV TP N+V G GA +P + H
Sbjct: 357 MGLVEVSTPAANLVAGIVGAVIEPLLKEH 385
>SB_39385| Best HMM Match : 7tm_1 (HMM E-Value=2.9e-28)
Length = 360
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 212 SFRNCLPISYTLSXPPTTSI 153
SF +CLP+SY LS P S+
Sbjct: 6 SFNSCLPLSYKLSDEPKPSL 25
>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
Length = 420
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 419 YSSKGWCEIDFYFLTLWSFWMIFDLVGSMNALYH 318
Y S+GW F L + W++FD++G + ++ H
Sbjct: 75 YHSEGW------FKLLHNVWLVFDILGGVGSILH 102
>SB_20922| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 576
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 273 DYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDF 398
DY ++ + + ++ VKYHP+ +GK+ E F
Sbjct: 26 DYYQILGVPRNASDKQIKKAFRKMAVKYHPDKNKGKDAEEKF 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,753,344
Number of Sequences: 59808
Number of extensions: 424354
Number of successful extensions: 772
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -