Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0203
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    27   1.6  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    26   2.7  
SPBC21.04 |med8|sep15|mediator complex subunit Med8|Schizosaccha...    25   4.8  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    25   8.4  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   8.4  

>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 192 DSKILTLQFDKNSLTIEWDDKTLQNFKADFLSQFDY 299
           D+ +  +  D   L +EW+DK  Q   A   ++FD+
Sbjct: 57  DNGVKIIDADGGMLAMEWEDKCTQLANAPSKAEFDF 92


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 96  PXEDCWLRDHCRCSQCY 146
           P ++CWL   C+   CY
Sbjct: 366 PEDECWLSTDCKVPTCY 382


>SPBC21.04 |med8|sep15|mediator complex subunit
           Med8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 240 EWDDKTLQNFKADFLSQFDYKTWXNNRRLKPRLW 341
           EW+  TLQ ++A   SQ   K   N+   K +LW
Sbjct: 105 EWEANTLQEYEASISSQ-PKKKEANDAYQKDQLW 137


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 186 LPDSKILTLQFDKNSLTIEWDDKTLQN 266
           LP+ +I T+  D       W+DKTL N
Sbjct: 246 LPNKEIATVSEDLTLRLWTWNDKTLTN 272


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 268 SKRTFCRNSIIKLGKTIAD*SLDCGAGCNXADRIAKVHV 384
           S+R   R  +  + + + + SL CG+ C  +D   K+HV
Sbjct: 207 SQRWIHREHLFNMPQKLTNVSL-CGSACAVSDDEGKIHV 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,599
Number of Sequences: 5004
Number of extensions: 32130
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)