Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0203
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family...    29   1.3  
At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containi...    28   3.0  
At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p...    28   4.0  
At4g27370.1 68417.m03929 myosin family protein contains Pfam pro...    27   5.3  
At1g20200.1 68414.m02524 26S proteasome regulatory subunit S3, p...    27   5.3  
At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR ...    27   9.3  
At5g23030.1 68418.m02692 senescence-associated family protein si...    27   9.3  
At2g39580.1 68415.m04855 expressed protein                             27   9.3  

>At4g11800.1 68417.m01879 calcineurin-like phosphoesterase family
            protein contains Pfam profile: PF00149 calcineurin-like
            phosphoesterase
          Length = 1012

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +3

Query: 174  HILELPDSKILTLQFDKN----SLTIEWDDKTLQNFKADFLSQFDYK 302
            HILE  D ++ TL  DK      L  +WD +  Q+FK  +  +F  K
Sbjct: 934  HILEDGDIEVFTLAVDKVPKDWKLDKDWDSEPKQSFKMSYEREFPSK 980


>At5g13270.1 68418.m01524 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 752

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 48  LLRXRVRVNFENGPSIPXEDCWLRDHCRC 134
           LL  R+R+  EN PS+  ++C L+ +C C
Sbjct: 104 LLHDRMRMGIEN-PSVLLQNCVLQMYCEC 131


>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
           putative (RPN3) similar to 26S proteasome regulatory
           subunit S3 SP:P93768 [Nicotiana tabacum (Common
           tobacco)]
          Length = 487

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +1

Query: 100 LKTVGSETIADVHNAITRIRSRELNTF*NCPIRRYLHYNSIRTV*QLNGTIRHYRI-SKR 276
           L  + S  +A  H+A  R       T  N  +R YLHYN      +L      +   S +
Sbjct: 177 LAEIRSTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQ 236

Query: 277 TFCRNSIIKLGK 312
            FCR  +  LGK
Sbjct: 237 QFCR-YLFYLGK 247


>At4g27370.1 68417.m03929 myosin family protein contains Pfam
            profiles: PF00063 myosin head (motor domain), PF00612 IQ
            calmodulin-binding motif
          Length = 1126

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 186  LPDSKILTLQFDKNSLTIEWDDKTLQNFKADFLSQFDYKTWXNNRRLKPR 335
            L D   L+ +FD+ S+ I  D K+L   K+D +S          RRLK R
Sbjct: 1041 LSDVNNLSTEFDQRSVIIHEDPKSLVEVKSDSISNRKQHA-EELRRLKSR 1089


>At1g20200.1 68414.m02524 26S proteasome regulatory subunit S3,
           putative (RPN3) similar to SP:Q06364 from [Daucus
           carota]
          Length = 488

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +1

Query: 121 TIADVHNAITRIRSRELN--TF*NCPIRRYLHYNSIRTV*QLNGTIRHYRI-SKRTFCRN 291
           T+  +H++ T +R  EL   T  N  +R YLHYN      +L      +   S + FCR 
Sbjct: 184 TLLALHHSAT-LRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCR- 241

Query: 292 SIIKLGK 312
            +  LGK
Sbjct: 242 YLFYLGK 248


>At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 809

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 258 LQNFKADFLSQFDYKTWXNNRRLKP 332
           L N+K    S+FD+ ++ +N RLKP
Sbjct: 294 LPNYKILVTSRFDFPSFDSNYRLKP 318


>At5g23030.1 68418.m02692 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 264

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 294 DYKTWXNNRRLKPRLWRGL*RC 359
           DY+ W  N  L+ + W G+ +C
Sbjct: 117 DYQNWIGNHFLRGKNWEGITKC 138


>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 183  ELPDSKILTLQFDKNSLTIEWDDKTLQ-NFKADFLSQFD 296
            +LPDS I  L+ +K  L IEW    L  + K   L  FD
Sbjct: 1102 KLPDSIIRRLEMEKELLEIEWPTVNLDGDLKQMALRLFD 1140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,360,758
Number of Sequences: 28952
Number of extensions: 161543
Number of successful extensions: 416
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)