Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0202
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 50 1e-06
07_01_0578 + 4295386-4296489,4297394-4297507 48 6e-06
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 33 0.13
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 32 0.22
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 30 1.2
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 29 1.6
03_01_0147 - 1170481-1171260,1171332-1171511 28 4.8
06_01_0896 - 6889754-6890236 27 6.3
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 6.3
09_06_0153 - 21243108-21245660 27 8.4
01_06_1536 + 38075023-38075359,38075834-38075963,38076204-380764... 27 8.4
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 49.6 bits (113), Expect = 1e-06
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 76 SVARPLVSVYS-EKSETVQGAAKPLPFVFKXPIRPDLVNDVHVSMSKNSRQPYCVRRR 246
+ ARPLVSV + E A +P V + PIRPD+V H +S N RQPY V RR
Sbjct: 3 AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRR 60
Score = 45.6 bits (103), Expect = 2e-05
Identities = 27/75 (36%), Positives = 29/75 (38%)
Frame = +2
Query: 254 QTSAESWXXXXXXXXXXXXXXXXXXXXXXXXXXNMCRGGRMFAPTKPWXXXXXXXXXXXX 433
QTSAESW NMCRGGRMFAPTK W
Sbjct: 64 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLR 123
Query: 434 XAAXXAXVAATGVXS 478
A + +AAT V S
Sbjct: 124 RIAVASALAATAVPS 138
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Frame = +1
Query: 85 RPLVSVYSEKSE--TVQGAAKPLPFVFKXPIRPDLVNDVHVSMSKNSRQPYCVRRR 246
RPLVSV + + + T ++ L VF+ P+RPD+V VH +S N RQPY V RR
Sbjct: 6 RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRR 61
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/75 (36%), Positives = 29/75 (38%)
Frame = +2
Query: 254 QTSAESWXXXXXXXXXXXXXXXXXXXXXXXXXXNMCRGGRMFAPTKPWXXXXXXXXXXXX 433
QTSAESW NMCRGGRMFAPTK W
Sbjct: 65 QTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLR 124
Query: 434 XAAXXAXVAATGVXS 478
A + +AAT V S
Sbjct: 125 RVAVASALAATSVPS 139
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 33.1 bits (72), Expect = 0.13
Identities = 20/52 (38%), Positives = 23/52 (44%)
Frame = +3
Query: 48 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 203
ASL N + P+F V G SQA V + GAHT G Q C F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +3
Query: 48 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 203
ASL N I +PTF +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +3
Query: 48 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 203
ASL N I +PT +G + G S + + GAHT G + C F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 48 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 203
ASL+ N ++ +PT V ++ G S V + GAHT G + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247
>03_01_0147 - 1170481-1171260,1171332-1171511
Length = 319
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 42 GIASLK*R-NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 203
G ASL+ ++I +PTF++ + G +Q V + GAHT G C+ F
Sbjct: 139 GTASLEPEVADNIPAPTFTLDQLTQSFAAKGLTQEEMVTLSGAHTVGRAH-CTSF 192
>06_01_0896 - 6889754-6890236
Length = 160
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 421 PPTXESGLXSXRCCYWRSQR 480
PP SG RCC WR +R
Sbjct: 85 PPLPRSGEEGHRCCLWRWRR 104
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 157 IRTGGAWLHPAPSHSSLN-TPTLKVGLPIDSF 65
+R+ WL P P+H ++N L + +P+D F
Sbjct: 865 LRSYITWLKPTPAHVAMNPAEALAMQIPVDHF 896
>09_06_0153 - 21243108-21245660
Length = 850
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 134 APCTVSLFSEYTDTKGRATDRLISLL*RSYTSEIYTNSGDK 12
APCTV +F++ +G A+ RL + + S + N GD+
Sbjct: 612 APCTVGVFADRPFWRGGASFRLPTKISTSEETTAARNQGDQ 652
>01_06_1536 +
38075023-38075359,38075834-38075963,38076204-38076419,
38076520-38077137,38077226-38078075
Length = 716
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 103 YSEKSETVQGAAKPLPFVFKXPIRPDLVNDVHVSMSKNSRQPYCVR 240
Y E +T+ G L F + PIR L N + + + + RQ VR
Sbjct: 275 YQEAVDTLSGIQLALYFSHRQPIRTPLQNTIALYWALSDRQLVTVR 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,317,941
Number of Sequences: 37544
Number of extensions: 173027
Number of successful extensions: 400
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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