Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0202
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                61   6e-10
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 60.9 bits (141), Expect = 6e-10
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = +1

Query: 82  ARPLVSVYSEKSETVQGAAKPLPFVFKXPIRPDLVNDVHVSMSKNSRQPYCVRR 243
           ARP+++V++E  E+       LP VFK PIRPDLVN VH +++KN RQPY V +
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 21/48 (43%), Positives = 21/48 (43%)
 Frame = +2

Query: 254 QTSAESWXXXXXXXXXXXXXXXXXXXXXXXXXXNMCRGGRMFAPTKPW 397
           QTSAESW                          NMCRGGRMFAPTK W
Sbjct: 58  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTW 105


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 149  GRGLAAPCTVSLFSEYTDTKGRATDRLI 66
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 273 HDSALVCDQPPSHAVGLPRVLGHR 202
           HD  ++   PPS A G+P VL HR
Sbjct: 143 HDPEILSMIPPSEATGIPFVLLHR 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,116,496
Number of Sequences: 59808
Number of extensions: 176248
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)