Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0202
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    56   2e-08
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    54   7e-08
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   2.3  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    27   5.3  
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    27   5.3  
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    27   5.3  
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    27   7.0  
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain...    27   7.0  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    27   9.3  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
 Frame = +1

Query: 67  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKXPIRPDLVNDVHVSMSKNSRQPYCVR 240
           M+ + ARPLV++ +   +  T Q +   LP V   P+RPD+VN VH  +S NSRQPY V 
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 241 RR 246
           ++
Sbjct: 61  KK 62



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 26/73 (35%), Positives = 28/73 (38%)
 Frame = +2

Query: 254 QTSAESWXXXXXXXXXXXXXXXXXXXXXXXXXXNMCRGGRMFAPTKPWXXXXXXXXXXXX 433
           QTSAESW                          NMCRGGRMFAPTK W            
Sbjct: 66  QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 125

Query: 434 XAAXXAXVAATGV 472
             A  + +AAT V
Sbjct: 126 RHAIVSAIAATAV 138


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = +1

Query: 76  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKXPIRPDLVNDVHVSMSKNSRQPYCVRRR 246
           + ARPLV+V     +  T Q     LP V   P+RPD+VN VH  +S NSRQPY V ++
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKK 63



 Score = 44.8 bits (101), Expect = 3e-05
 Identities = 26/73 (35%), Positives = 28/73 (38%)
 Frame = +2

Query: 254 QTSAESWXXXXXXXXXXXXXXXXXXXXXXXXXXNMCRGGRMFAPTKPWXXXXXXXXXXXX 433
           QTSAESW                          NMCRGGRMFAPTK W            
Sbjct: 67  QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVNMK 126

Query: 434 XAAXXAXVAATGV 472
             A  + +AAT V
Sbjct: 127 RHAIVSAIAATAV 139


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 91  LVSVYSEKSETVQGAAKPLPFVFKXPIRPDLVNDVHVSMSKNSRQPYCV 237
           LV +++  SE+++    PLPF  K P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 142 PLPFVFKXPIRPDLVNDVHVSMSKNSRQPYCV 237
           P+PF  K P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 142 PLPFVFKXPIRPDLVNDVHVSMSKNSRQPYCV 237
           P+PF  K P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 364 WWTYVRPHEALAALAPSRQPPTXESGLXSXRCC 462
           WW +V     LA+ APS   P  +  L   R C
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 497


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 364 WWTYVRPHEALAALAPSRQPPTXESGLXSXRCC 462
           WW +V     LA+ APS   P  +  L   R C
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLC 496


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 66  NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 203
           N +I +PT S+          G S    V + GAHT G  + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207


>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to CLATHRIN
           COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
           SWISSPROT:Q61548
          Length = 599

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 130 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 32
           PAPS ++ N   +   +P+D F    E  PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 145 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPPKY 32
           G W+H   SH+  ++  L VG+ +      Y+S + P +Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,655,753
Number of Sequences: 28952
Number of extensions: 123150
Number of successful extensions: 321
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)