Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0201
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 259 8e-70
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 256 7e-69
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 256 7e-69
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 256 9e-69
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 256 9e-69
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 253 5e-68
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 253 5e-68
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 252 1e-67
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 252 2e-67
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 124 4e-29
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 123 9e-29
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 123 9e-29
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 120 8e-28
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 120 8e-28
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 117 5e-27
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 117 5e-27
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 103 8e-23
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 103 1e-22
At4g37190.1 68417.m05265 expressed protein 31 0.67
At2g31580.1 68415.m03858 expressed protein contains Pfam profi... 31 0.67
At5g24010.1 68418.m02821 protein kinase family protein contains ... 29 2.0
At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein ... 29 2.7
At1g21850.1 68414.m02735 multi-copper oxidase type I family prot... 28 3.6
At2g38800.1 68415.m04764 calmodulin-binding protein-related cont... 28 4.7
At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putati... 27 6.2
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 8.3
At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,... 27 8.3
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 259 bits (635), Expect = 8e-70
Identities = 113/138 (81%), Positives = 128/138 (92%), Gaps = 1/138 (0%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGQV 242
MREI+H+Q GQCGNQIG+KFWE+I DEHG+DPTG Y+GDS DLQLERINVYYNEASGG+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERINVYYNEASGGRY 60
Query: 243 RAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 422
+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 423 VRKEAESCDCLQGFQLTH 476
VRKEAE+CDCLQGFQ+ H
Sbjct: 121 VRKEAENCDCLQGFQVCH 138
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 256 bits (627), Expect = 7e-69
Identities = 112/137 (81%), Positives = 126/137 (91%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIG+KFWE++ DEHGIDPTG Y G+SDLQLER+NVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV 60
Query: 246 APRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
IL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVV
Sbjct: 61 PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV 120
Query: 426 RKEAESCDCLQGFQLTH 476
RKEAE+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 256 bits (627), Expect = 7e-69
Identities = 114/138 (82%), Positives = 126/138 (91%), Gaps = 1/138 (0%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDS-DLQLERINVYYNEASGGQV 242
MREI+HIQ GQCGNQIG+KFWE+I DEHGID TG Y GD+ DLQLERINVYYNEASGG+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY 60
Query: 243 RAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 422
+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV
Sbjct: 61 VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV 120
Query: 423 VRKEAESCDCLQGFQLTH 476
VRKEAE+CDCLQGFQ+ H
Sbjct: 121 VRKEAENCDCLQGFQVCH 138
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 256 bits (626), Expect = 9e-69
Identities = 113/137 (82%), Positives = 124/137 (90%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 246 APRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKEAESCDCLQGFQLTH 476
RKEAE+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 256 bits (626), Expect = 9e-69
Identities = 113/137 (82%), Positives = 124/137 (90%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIGAKFWE++ EHGIDPTG Y GDSDLQLERINVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGRFV 60
Query: 246 APRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
+L+DLEPGTMDS+RSGP+GQ FRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKEAESCDCLQGFQLTH 476
RKEAE+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 253 bits (620), Expect = 5e-68
Identities = 111/137 (81%), Positives = 124/137 (90%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIGAKFWE++ EHGID TG Y G++DLQLER+NVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFV 60
Query: 246 APRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKEAESCDCLQGFQLTH 476
RKEAE+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 253 bits (620), Expect = 5e-68
Identities = 113/137 (82%), Positives = 124/137 (90%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIGAKFWE+I EHGID TG GD+DLQLERINVY+NEASGG+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDLQLERINVYFNEASGGKYV 60
Query: 246 APRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKEAESCDCLQGFQLTH 476
RKEAE+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 252 bits (617), Expect = 1e-67
Identities = 111/137 (81%), Positives = 125/137 (91%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIG+KFWE+++ EHGID TG Y GDS+LQLER+NVYYNEAS G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGRYV 60
Query: 246 APRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
+L+DLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKEAESCDCLQGFQLTH 476
RKEAE+CDCLQGFQ+ H
Sbjct: 121 RKEAENCDCLQGFQVCH 137
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 252 bits (616), Expect = 2e-67
Identities = 113/137 (82%), Positives = 124/137 (90%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVR 245
MREI+HIQ GQCGNQIGAKFWE+I DEHGID TG Y GDS LQLERI+VY+NEASGG+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGKYV 60
Query: 246 APRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 425
+L+DLEPGTMDS+RSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+DSVLDVV
Sbjct: 61 PRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVV 120
Query: 426 RKEAESCDCLQGFQLTH 476
RKEAE+ DCLQGFQ+ H
Sbjct: 121 RKEAENSDCLQGFQVCH 137
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 124 bits (299), Expect = 4e-29
Identities = 58/135 (42%), Positives = 83/135 (61%), Gaps = 2/135 (1%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 239
MREI+ I GQ G Q+G WE+ EHGI P G DS + + N +++E S GQ
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 240 VRAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 419
+ +DLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD+ L+
Sbjct: 61 HVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLE 120
Query: 420 VVRKEAESCDCLQGF 464
+RK A++C LQGF
Sbjct: 121 RLRKLADNCTGLQGF 135
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 123 bits (296), Expect = 9e-29
Identities = 58/135 (42%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 239
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 240 VRAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 419
+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 420 VVRKEAESCDCLQGF 464
VRK A++C LQGF
Sbjct: 121 RVRKLADNCTGLQGF 135
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 123 bits (296), Expect = 9e-29
Identities = 58/135 (42%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 239
MREI+ I GQ G Q+G WE+ EHGI P G D+ + + + N +++E G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 240 VRAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 419
+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLD 120
Query: 420 VVRKEAESCDCLQGF 464
VRK A++C LQGF
Sbjct: 121 RVRKLADNCTGLQGF 135
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 120 bits (288), Expect = 8e-28
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 239
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 240 VRAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 419
+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 420 VVRKEAESCDCLQGF 464
+RK A++C LQGF
Sbjct: 121 RIRKLADNCTGLQGF 135
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 120 bits (288), Expect = 8e-28
Identities = 57/135 (42%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 239
MRE + I GQ G Q+G WE+ EHGI P G GD + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 240 VRAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 419
+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 420 VVRKEAESCDCLQGF 464
+RK A++C LQGF
Sbjct: 121 RIRKLADNCTGLQGF 135
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 117 bits (282), Expect = 5e-27
Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 239
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 240 VRAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 419
+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 420 VVRKEAESCDCLQGF 464
+RK A++C LQGF
Sbjct: 121 RIRKLADNCTGLQGF 135
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 117 bits (282), Expect = 5e-27
Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQL--ERINVYYNEASGGQ 239
MRE + I GQ G Q+G WE+ EHGI P G D + + N +++E G+
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 240 VRAPRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 419
+ VDLEP +D VR+G + Q+F P+ + G+ A NN+A+GHYT G E+VD LD
Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 420 VVRKEAESCDCLQGF 464
+RK A++C LQGF
Sbjct: 121 RIRKLADNCTGLQGF 135
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 103 bits (247), Expect = 8e-23
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Frame = +3
Query: 69 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVRA 248
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 249 PRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 422
+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 423 VRKEAESCDCLQGFQLTH 476
+ +EA+ D L+GF L H
Sbjct: 122 IDREADGSDSLEGFVLCH 139
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 103 bits (246), Expect = 1e-22
Identities = 48/138 (34%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Frame = +3
Query: 69 REIVHIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGQVRA 248
REI+ +Q GQCGNQIG +FW+ + EHGI G + +R +V++ +A
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDQHYIP 62
Query: 249 PRILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDV 422
+L+DLEP ++ +++G + ++ +N GAGNNWA G Y +G + + ++D+
Sbjct: 63 RALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG-YHQGKGVEEEIMDM 121
Query: 423 VRKEAESCDCLQGFQLTH 476
+ +EA+ D L+GF L H
Sbjct: 122 IDREADGSDSLEGFVLCH 139
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 30.7 bits (66), Expect = 0.67
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 66 MREIVHIQAGQCGNQIGAKFWEIISDEHGI 155
MREIV IQ G+ N +G+ FW + G+
Sbjct: 1 MREIVTIQVGEFANFVGSHFWNFQDELLGL 30
>At2g31580.1 68415.m03858 expressed protein contains Pfam profile:
PF04446 family of unknown function (DUF549)
Length = 567
Score = 30.7 bits (66), Expect = 0.67
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +3
Query: 399 LVDSVLDVVRKEAESCDCLQGF 464
+++SV VVRKEAE+C+CLQ F
Sbjct: 1 MINSV-GVVRKEAENCNCLQVF 21
>At5g24010.1 68418.m02821 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 824
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 481 SECVSWNPWRQSHDSASFRTTSKTESTSSAPSV*CPLAQL 362
SE W P R+ S++ RTT +T S+S ++ A+L
Sbjct: 443 SESTGWTPLRRFRGSSNSRTTERTVSSSGYHTLRISFAEL 482
>At2g37740.1 68415.m04629 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 304
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 474 VSVGIPGGNHTIPLPFERRLKLNRRAQHPPCSVPWPSC 361
VS G+PG HT P ++ ++ +++ P S PW SC
Sbjct: 136 VSSGLPGKQHTSSSPPSFVVEPSKNSKYIPSSSPW-SC 172
>At1g21850.1 68414.m02735 multi-copper oxidase type I family protein
similar to pollen-specific BP10 protein
[SP|Q00624][Brassica napus]; contains Pfam profile:
PF00394 Multicopper oxidase
Length = 551
Score = 28.3 bits (60), Expect = 3.6
Identities = 24/78 (30%), Positives = 34/78 (43%)
Frame = -1
Query: 248 GTYLPAGGFIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAALTSLDMYDFP 69
G + AGGF + I + + ++ VP G VL+GD DL A L + FP
Sbjct: 132 GFHKAAGGFGAIRISS-RPRIPVPFPAPAGDYTVLIGDWYKTNHKDLRAQLDNGGKLPFP 190
Query: 68 HFVLFM*TINYLTLKICP 15
+L + TL I P
Sbjct: 191 DGILINGRGSGATLNIEP 208
>At2g38800.1 68415.m04764 calmodulin-binding protein-related
contains similarity to potato calmodulin-binding protein
PCBP GI:17933110 from [Solanum tuberosum]
Length = 612
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 344 SEDEVVRTEDLSERSRADRVHGAGLQVDEDAR 249
SE+E V+ +DL E+ + +G +VD D++
Sbjct: 221 SEEEFVKMDDLEEKKEFENGNGGSCEVDIDSQ 252
>At3g10900.1 68416.m01312 (1-4)-beta-mannan endohydrolase, putative
similar to (1-4)-beta-mannan endohydrolase [Coffea
arabica] GI:10178872, (1-4)-beta-mannan endohydrolase
GB:AAB87859 [Lycopersicon esculentum]; contains Pfam
profile PF00150: Cellulase (glycosyl hydrolase family 5)
Length = 408
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 72 EIVHIQAGQCGNQIGAKFWEIISD 143
+I++ A + G+ GA FWE+IS+
Sbjct: 346 DIIYASAQKGGSAAGALFWEVISE 369
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 8.3
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = -1
Query: 224 FIVVYIDALQLQVRVPMVGTGGVDAVLVGDDLPELSSDLVAAL------TSLDMYDFPHF 63
F++V+ L Q V +GT GV+ + D+LP S D VA L + +YD H
Sbjct: 24 FLLVF-SILSSQTAVAFIGTYGVNYGRIADNLP--SPDAVATLLKSAKIRNTRIYDADHS 80
Query: 62 VL 57
VL
Sbjct: 81 VL 82
>At2g32810.1 68415.m04016 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase GI:7939617 from
[Lycopersicon esculentum]
Length = 887
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 87 QAGQCGNQIGAKFWEIISDEHGIDPTGAYHG 179
QA G IG ++W IIS + G D T Y G
Sbjct: 678 QAWVNGQHIG-RYWNIISQKDGCDRTCDYRG 707
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,467,219
Number of Sequences: 28952
Number of extensions: 235448
Number of successful extensions: 722
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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