Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0200
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 116 3e-27
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 116 3e-27
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.2
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 27 1.6
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 27 2.1
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 27 2.7
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 3.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 3.6
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 4.8
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 6.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 25 6.3
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 25 8.4
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 116 bits (278), Expect = 3e-27
Identities = 54/91 (59%), Positives = 56/91 (61%)
Frame = +2
Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 434 XXXXXXXXXXXXXXXXXQARGHIIERFPSFP 526
ARGH IE P P
Sbjct: 121 RYAIASAVAASGVPSLLLARGHRIEEIPEVP 151
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/58 (53%), Positives = 40/58 (68%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVRRR 246
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY V +
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57
Score = 32.3 bits (70), Expect = 0.055
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 508 KIPELPLVVAEKVQEINKTKQAV 576
+IPE+PLVV + VQ KTK+AV
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAV 168
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 116 bits (278), Expect = 3e-27
Identities = 54/91 (59%), Positives = 56/91 (61%)
Frame = +2
Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEK 120
Query: 434 XXXXXXXXXXXXXXXXXQARGHIIERFPSFP 526
ARGH IE P P
Sbjct: 121 RYAISSAVAASGVPSLLLARGHRIEEIPEVP 151
Score = 68.5 bits (160), Expect = 7e-13
Identities = 32/58 (55%), Positives = 40/58 (68%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVRRR 246
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY V +
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57
Score = 32.3 bits (70), Expect = 0.055
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 508 KIPELPLVVAEKVQEINKTKQAV 576
+IPE+PLVV + VQ KTK+AV
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAV 168
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = -2
Query: 369 PPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHDSALVCDQPPSHAVGLPRVLGHRNVNI 190
PP+ P P P + VPPP + A P SA P S A +P G R+ +
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPS----APPMPAGPPSAPPPPLPASSAPSVPNP-GDRSA-L 1752
Query: 189 IDQVRTYGRLE 157
+ Q+ T RL+
Sbjct: 1753 LQQIHTGTRLK 1763
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 512 FPSFPWL*PKKSRRSTRPNRLSSSEAP 592
+P++ PKK+R++ RP +L +S AP
Sbjct: 28 YPAYRENVPKKARKAVRPTKLRASLAP 54
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +2
Query: 215 TRGSPTA*EGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 355
TRGS SQ S + GR R R RGG +RS +G + N
Sbjct: 345 TRGSSKRPSVNRSQGSGQRGRGGRGFYRGGRGRGGFFNRSKRGQYSN 391
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -1
Query: 517 RESFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPP 395
R+S V+ N W + + GC G L + A + PP
Sbjct: 178 RDSTRQVTIVPNRHWGGNGAIGCGVGHGVLHRLPAPLSGPP 218
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 134 APCTVSLFSEYTDTKGRATDRLISLL 57
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 3.6
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = -2
Query: 384 GANIRPPRHMLPKAP*PDLWVPPPRTR--GIRATARPVPHDSALVCDQPPSHAVGLPRVL 211
GA PP P P L R+R I + P P L+ P S +G L
Sbjct: 336 GAFSAPPAPFFPLGFSPHLNDESSRSRWSNISYSPPPPPPPPELLNHSPKSRPLGDKPYL 395
Query: 210 GHRNVNIIDQVRTYGR 163
+RN I + RT GR
Sbjct: 396 FYRNNQIGPRTRTEGR 411
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 72 SIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGP 182
SI SP+ SVG + D + S + P+ I G + P
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNP 348
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -1
Query: 535 LQPREARESFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPP 395
++P + +S NN +++ S +G + + E+D T P PP
Sbjct: 1 MEPIQKMDSLNNKEGQPDKKRKKHESEK--EGENEVLEIDVTKPVPP 45
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -1
Query: 553 SPGLFRLQPREARESFNNVSSSLNERWDASSSNGCCQG 440
SP +F+ P E +E+ NN+ +++ ++ +NG +G
Sbjct: 642 SPTVFQTSPEEDKENVNNI--KISQPRNSLQTNGYIEG 677
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -3
Query: 311 GHAEFGQQHVR--YPMIRHWFV 252
G++ F +HV +P ++HWFV
Sbjct: 320 GNSTFPTRHVLSYFPQVKHWFV 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,274,204
Number of Sequences: 5004
Number of extensions: 43328
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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