Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0200
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               123   1e-28
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              37   0.011
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               37   0.014
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     34   0.10 
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  32   0.40 
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   30   1.2  
SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 30   1.6  
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_42653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)          28   6.6  
SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)                   28   6.6  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 27   8.7  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     27   8.7  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       27   8.7  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  123 bits (296), Expect = 1e-28
 Identities = 57/91 (62%), Positives = 59/91 (64%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
           QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH        
Sbjct: 58  QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQR 117

Query: 434 XXXXXXXXXXXXXXXXXQARGHIIERFPSFP 526
                             ARGH IE+    P
Sbjct: 118 RFAVCSALAASALPALIMARGHRIEKIAEVP 148



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 29/54 (53%), Positives = 39/54 (72%)
 Frame = +1

Query: 82  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVRR 243
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V +
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = +2

Query: 242 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 403
           GGW Q     WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 14  GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = +2

Query: 242 GGWSQTSAESWGT--GRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 397
           GG  +     WG   G  + R P   GGG  R   G +G M  GG    P + W
Sbjct: 54  GGMGRGPGGGWGRMQGGGMGRGP---GGGLGRGPGGGWGRMQEGGMGRGPGQGW 104


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 20/54 (37%), Positives = 23/54 (42%)
 Frame = +2

Query: 242 GGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 403
           GGW Q     WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 258 GGWGQGPGGGWGRGQGRG-MGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310



 Score = 30.7 bits (66), Expect = 0.93
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = +2

Query: 218 RGSPTA*EGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 397
           RG      GGW + S   WG         R++GGG  R   G +G M +GG    P   W
Sbjct: 274 RGMGRGPGGGWGRGSGGGWG---------RMQGGGMGRGPGGGWGRM-QGGMGRGPGGGW 323

Query: 398 RR 403
            R
Sbjct: 324 GR 325


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 368 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWF 255
           HH  CY  H    Y Y+ H H  + + H  YP  RH++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 209  PRTRGSPTA*EGGWSQTSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 373
            P  R SP+        T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 967  PSHRSSPSTPGSPSIPTPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
 Frame = -3

Query: 368 HHDTCYRRHPDRTYGYHHHGHAEFGQQH-------VRYPMIRHWFVTSLL 240
           HH     RH  R + +HHH H E+ ++H       +   +IRH F+  ++
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRHRYFTDINITIQIIRHHFIIIII 373


>SB_25421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 327 WVPPPRTRGIRATARPVPHD 268
           W+PP RTR  R T  PV H+
Sbjct: 228 WMPPVRTRPARPTVMPVTHE 247


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 368 HHDTCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFVTSLLL 237
           HH   + RH  R + YHHH +      H  +P     FVT++++
Sbjct: 570 HHHLHHHRHHHRHHHYHHHHY----PHHHHHPCTIIIFVTTIII 609


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 377 TYVHHDTCYRRHPDRTYGYHHHGHA 303
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 353 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 261
           Y +HP  T+ YHH  H +   ++ ++P + H
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTH 442



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 353 YRRHPDRTYGYHHHGHAEFGQQHVRYPMIRH 261
           Y +HP  T+ YH H      + H ++P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 279 VPHDSALVCDQPPSHAVGLPRVLGHR 202
           + HD  ++   PPS A G+P VL HR
Sbjct: 141 IAHDPEILSMIPPSEATGIPFVLLHR 166


>SB_42653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 444 WQQPLLLLASQRSFRLEDTLLKDSRASLGCS 536
           W + +L + S R+FRL     +DS+ +L C+
Sbjct: 17  WLKVILPVMSPRAFRLTPLFFQDSKGTLACA 47


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 149  GRGLAAPCTVSLFSEYTDTKGRATDRLI 66
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_32896| Best HMM Match : F5_F8_type_C (HMM E-Value=8.6e-17)
          Length = 278

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 359 TCYRRHPDRTYGYHHHGHAEFGQQHVRYPMIRHWFVTSLL 240
           TC+  HP   + Y H+ H  F Q H    + RH+  TS L
Sbjct: 52  TCFPYHPHYHHHYRHNDH-YFHQDH----LYRHYLSTSAL 86


>SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)
          Length = 397

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
 Frame = -2

Query: 366 PRHMLPKAP*PDLWVPPPRTRGIR-ATARPVPHDSALVCDQPP-SHAVGLPRV 214
           P  + P  P P    PPPR    R     P P  S     QPP S  VG P V
Sbjct: 246 PPSVKPSVPIPPPTKPPPRVASRRPPPPLPPPDSSEAQAQQPPLSPPVGKPVV 298


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 372 RPPRHMLPKAP*PDLWVPPPRTRGIRATARPVPHD 268
           RPP H   + P PD WVP P  R        +P D
Sbjct: 250 RPPPHHDMRGP-PDQWVPGPEQRRDNMRGPGMPPD 283


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 368 HHDTCYRRHPDRTYGYHHH 312
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 374 YVHHDTCYRRHPDRTYGYHHHGH 306
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,115,989
Number of Sequences: 59808
Number of extensions: 386221
Number of successful extensions: 1280
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)