Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0200
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   115   3e-26
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    30   1.4  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AC087232-4|AAK09080.2|  637|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  115 bits (276), Expect = 3e-26
 Identities = 54/91 (59%), Positives = 58/91 (63%)
 Frame = +2

Query: 254 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXX 433
           Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH        
Sbjct: 60  QHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQK 119

Query: 434 XXXXXXXXXXXXXXXXXQARGHIIERFPSFP 526
                            QARGH+I++    P
Sbjct: 120 RYAVSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = +1

Query: 82  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVRRR 246
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V  +
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTK 56



 Score = 34.7 bits (76), Expect = 0.051
 Identities = 13/25 (52%), Positives = 21/25 (84%)
 Frame = +1

Query: 508 KIPELPLVVAEKVQEINKTKQAVIF 582
           ++ E+PLVV++KV+   KTK+AV+F
Sbjct: 145 QVAEVPLVVSDKVESFRKTKEAVVF 169


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 187 NDVHVSMSKNSRQP-YCVRRRLVTNQC--RIMGYRTCCCPNSAC 309
           N V  + S  +  P Y  R    TN+C  +  G+ TCCC + AC
Sbjct: 844 NGVATTASLYTCDPSYICRMMNSTNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +1

Query: 187 NDVHVSMSKNSRQP-YCVRRRLVTNQC--RIMGYRTCCCPNSAC 309
           N V  + S  +  P Y  R    TN+C  +  G+ TCCC + AC
Sbjct: 844 NGVATTASLYTCDPSYICRMMNSTNRCHQQEQGFETCCCDSDAC 887


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 538 RLQPREARESFNNVSSSLNER 476
           R QP  +R S NN+SSSL+ R
Sbjct: 24  RRQPHHSRSSSNNISSSLHSR 44


>AC087232-4|AAK09080.2|  637|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.3a protein.
          Length = 637

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 544 LFRLQPREARESFNNVSSSLNERWDASSSNGCCQGRSPLSE 422
           LF+  P+  +   + +    N  ++ + S+G CQ  SPL +
Sbjct: 306 LFKATPKRYKNGTDYILHDFNYGYEFTMSHGACQSFSPLDD 346


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 130 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 29
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 368 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 285
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,012,577
Number of Sequences: 27780
Number of extensions: 272664
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)