Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0199
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    28   0.36 
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   0.63 
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   3.4  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    24   5.9  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    24   5.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    24   7.8  

>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 28.3 bits (60), Expect = 0.36
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 49  QKLKEHGASSCISGKRGRRCGNIWHWGS 132
           Q   E  A +C  G  G  CG +W+W +
Sbjct: 394 QSSAEAAALACSGGSDGVTCGYMWYWNN 421


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 92  LPLMQLEAPCSFNFCSLRA 36
           LP + L +PCSF  CSLRA
Sbjct: 56  LPFLTL-SPCSFTICSLRA 73


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 70  ASSCISGKRGRRCGNIWHWGS 132
           A  C  G  G  CG  W W +
Sbjct: 337 AKQCCGGYSGTSCGIYWFWNN 357


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 143 MESTDPQCHILPHRRPRLPLMQLEAPCSF 57
           M+S   Q ++L   RP LPL     P  F
Sbjct: 88  MDSLSHQIYLLHKNRPTLPLKPTNQPTRF 116


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 130 SVDSISGSRAPFQLSGHSGTNHSRCCTSILREFSGRQH 243
           + +++ G    F +  H   N S C T   R F   QH
Sbjct: 203 AANNVKGVTKVFNVLDHPDINDSTCLTKEARYFVKEQH 240


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 9   NIVAFIPAYRSKRTKIK 59
           N V+ IP YR+ +TK+K
Sbjct: 406 NAVSTIPVYRTTKTKMK 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,267,711
Number of Sequences: 5004
Number of extensions: 20159
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)