Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0199
         (349 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           31   0.25 
05_01_0046 + 320600-320631,320694-320733,320871-320957,321282-32...    30   0.43 
09_04_0269 + 16265191-16265472,16265574-16266149                       28   2.3  
07_03_1624 + 28204892-28205024,28205160-28205242,28205305-282053...    27   3.1  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   3.1  
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461     27   4.0  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    27   4.0  
05_01_0369 + 2907180-2907764,2907899-2908276                           26   9.3  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 31.1 bits (67), Expect = 0.25
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -3

Query: 146 LMESTDPQCHILPHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 6
           LM      C  LPHR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_01_0046 +
           320600-320631,320694-320733,320871-320957,321282-321378,
           321532-321823,321850-321990,322285-322390
          Length = 264

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +1

Query: 37  ARREQKLKEHGASSCISGKRGRRCGNIWHWGSVDSISGSRAPFQLSGHSGTNHSR 201
           A++ +   E   S    G  G +    W+W   D  SGS + FQ    S +N SR
Sbjct: 87  AQKWKNFDEDDCSDTPYGNFGGKRSFTWYWPGEDDESGSPSGFQWRDESQSNKSR 141


>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 197 LWFVPLCPLS*NGAREPL---MESTDPQCHILPHRRPRLPL 84
           ++ +P  P    G   PL   M  T P C +L + RPRLPL
Sbjct: 136 VYVLPFAPSLVRGRWVPLVGEMARTGPLCLLLENPRPRLPL 176


>07_03_1624 +
           28204892-28205024,28205160-28205242,28205305-28205376,
           28205889-28205946,28206554-28206603,28207805-28207873,
           28208183-28208317,28208410-28208581,28208663-28208754,
           28208837-28209244,28209783-28210704,28211592-28211831,
           28211898-28212229,28212460-28212608,28213265-28213841,
           28214078-28214224,28214693-28214968,28215296-28215403,
           28215634-28215839,28216079-28216217,28216329-28216982,
           28218040-28218099,28218234-28218388,28218414-28218636,
           28218729-28218773
          Length = 1834

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 31  RIARREQKLKEHGASSCISGKRGRRCGNIWHWGSVDSISGSRAPFQLSGHSG 186
           +I R+   L  + +    S K  +R GN   WGS+      R+     GHSG
Sbjct: 545 KIDRKRAGLPSYSSPQS-SSKASKRGGNELLWGSLPLSIKKRSDLNADGHSG 595


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 31  RIARREQKLKEHGASSCISGKRGRRC 108
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
          Length = 353

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +1

Query: 37  ARREQKLKEHG-ASSCISGKRGRRCGNIWHWGSVDSISG 150
           A RE  + ++G A    +   G R  N W  G  DS+SG
Sbjct: 44  ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82


>02_01_0399 -
           2905026-2905406,2905522-2905630,2905809-2907475,
           2907650-2907790,2907870-2908043,2908577-2908851,
           2909592-2909755,2910409-2910536,2910628-2910734,
           2911747-2911880,2912266-2912441,2912530-2914257,
           2915084-2915239,2915328-2915486,2915581-2915751,
           2915931-2916047,2916417-2916473,2916565-2916680,
           2916790-2916916,2917862-2917945
          Length = 2056

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 279 GGYHGSSSHCDTMLP 235
           G +HG +SHC T+LP
Sbjct: 208 GFHHGGTSHCRTLLP 222


>05_01_0369 + 2907180-2907764,2907899-2908276
          Length = 320

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 149 PLMESTDPQCHILPHRR 99
           PL  S DP+CH  P RR
Sbjct: 40  PLPGSADPRCHASPPRR 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,058,184
Number of Sequences: 37544
Number of extensions: 159248
Number of successful extensions: 353
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)