Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0199
         (349 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46454| Best HMM Match : GSPII_F (HMM E-Value=0.43)                  29   1.4  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               28   1.8  
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.8  
SB_7919| Best HMM Match : Herpes_UL1 (HMM E-Value=2.9)                 27   4.2  
SB_41417| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.2  
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)                    27   4.2  
SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)              27   5.5  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  26   7.3  
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)              26   9.7  
SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)                 26   9.7  

>SB_46454| Best HMM Match : GSPII_F (HMM E-Value=0.43)
          Length = 278

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 76  SCISGKRGRRCGNIWHWGSVDSISGSRAPFQ 168
           S I G R +RCG++  +GS D +     P +
Sbjct: 38  SVIQGARSQRCGDVMSYGSTDWLKAGCKPIR 68


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 118 WHWGSVDSISGSRAPFQLSGHSGTNHSRCCTSILR 222
           + W  VDSI+ S+A F  S  +  NH    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 877

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 245 QCCRPLNSRSMLVQQRLWFVPLCPLS*NGAREPLMESTDPQCHILPHRRPRLPL 84
           Q C  L++  +L++Q  WF    P S   +R+ ++        + P R PR+PL
Sbjct: 557 QLCNVLSNAPVLIEQLSWF---SPTSFVESRDLVLLGMSVSDKLDPQRTPRIPL 607


>SB_7919| Best HMM Match : Herpes_UL1 (HMM E-Value=2.9)
          Length = 262

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 273 YHGSSSHCDTMLPATKFP 220
           Y GS+S C  ++P T++P
Sbjct: 9   YRGSASSCQRLIPTTRYP 26


>SB_41417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 273 YHGSSSHCDTMLPATKFP 220
           Y GS+S C  ++P T++P
Sbjct: 9   YRGSASSCQRLIPTTRYP 26


>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
          Length = 636

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 109 GNIWHWGSVDSISGSRAPFQLSGHSGTNHSRCCTSILREFSGRQ 240
           G  W WG+ D   GS     + GH G++ S   T I++  +G +
Sbjct: 10  GPDWKWGNQDGGEGSVGTVVVVGHPGSSTSPDKTVIVQWDTGNR 53


>SB_59289| Best HMM Match : Lectin_C (HMM E-Value=2.1e-05)
          Length = 769

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 82  ISGKRGRRCGNIWHWGSVDSISGSRAPFQ 168
           I G R +RCG++  +GS D +     P +
Sbjct: 537 IQGARAQRCGDVMPYGSTDWLKAGCYPIR 565


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 158 AREPL-MESTDPQCHILPHRRPRLPLMQLEAPCSFNFCSLRAI 33
           +REP    S  PQ H+L  +R  L + ++   CS   CS+  I
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
          Length = 688

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -3

Query: 179 CPLS*NGAREPLMESTDPQCHILPHRRPRLPLMQLEAPCSFNFC 48
           CP+      EP+M  T   C ++P  + +L    +   C   FC
Sbjct: 461 CPICQEELAEPIMLRTCKVCFVMPTCQVKLAKQIMLRTCKHIFC 504


>SB_37206| Best HMM Match : MFS_1 (HMM E-Value=3.4e-17)
          Length = 1088

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/17 (70%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = +2

Query: 116 YGTGGLLTPLVA-PVLR 163
           YG GG +TPLVA P LR
Sbjct: 185 YGLGGFITPLVARPFLR 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,988
Number of Sequences: 59808
Number of extensions: 175871
Number of successful extensions: 360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)