Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0199
         (349 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.        29   1.2  
AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior phar...    29   1.2  
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.     27   2.8  
Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U07628-1|AAA17738.1|  515|Caenorhabditis elegans APX-1 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = +1

Query: 37  ARREQKLKEHGASSCISGKRGRRCGNIWHWGSVDSISGSRAPFQLSGHSGTNHSRC 204
           A+   +   HG   C +G  G  C N    G   +     AP Q S   G N +RC
Sbjct: 149 AKLHWECSTHGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSCADGFNGTRC 204


>AF101319-2|AAC69353.4|  515|Caenorhabditis elegans Anterior pharynx
           in excess protein1 protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/56 (30%), Positives = 22/56 (39%)
 Frame = +1

Query: 37  ARREQKLKEHGASSCISGKRGRRCGNIWHWGSVDSISGSRAPFQLSGHSGTNHSRC 204
           A+   +   HG   C +G  G  C N    G   +     AP Q S   G N +RC
Sbjct: 149 AKLHWECSTHGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSCADGFNGTRC 204


>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 224 NLVAGSIVSQ*LLLPW*PPRHEVMLN--ITRYRI 319
           N+V  S+ S+ +++ W PP++   +N  +  YR+
Sbjct: 344 NIVVSSVTSESVVITWKPPKYNEAINKYVVNYRL 377


>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical
           protein C09D8.1a protein.
          Length = 2180

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 224 NLVAGSIVSQ*LLLPW*PPRHEVMLN--ITRYRI 319
           N+V  S+ S+ +++ W PP++   +N  +  YR+
Sbjct: 344 NIVVSSVTSESVVITWKPPKYNEAINKYVVNYRL 377


>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
          Length = 2200

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 224 NLVAGSIVSQ*LLLPW*PPRHEVMLN--ITRYRI 319
           N+V  S+ S+ +++ W PP++   +N  +  YR+
Sbjct: 344 NIVVSSVTSESVVITWKPPKYNEAINKYVVNYRL 377


>Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical
           protein F44D12.2 protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 125 QCHILPHRRPRLPLMQLEAPCSFNFCSLRAIRR 27
           +CH+  +  PRLP ++  + C   FC + A  R
Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,193,984
Number of Sequences: 27780
Number of extensions: 121316
Number of successful extensions: 253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)