Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0197
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)                  45   4e-05
SB_15802| Best HMM Match : rve (HMM E-Value=6.9e-21)                   31   0.47 
SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)             28   5.8  

>SB_44686| Best HMM Match : DUF1126 (HMM E-Value=0.37)
          Length = 93

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +3

Query: 255 YSFLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMLQIGNIV 434
           ++FL E YD  A   +   L ++  DNSV++ D K  +  LKR +      D   IG IV
Sbjct: 7   FAFLAEWYDPQAALTRKYQLLFYASDNSVEMYDIKNRRLFLKRSKCDQYKADDFYIGAIV 66

Query: 435 NIFSNYY-ISRXRSCYTENAFQNV 503
           NI S    I+     +T N  +N+
Sbjct: 67  NIHSRQLKITDYCDKHTTNRLKNI 90


>SB_15802| Best HMM Match : rve (HMM E-Value=6.9e-21)
          Length = 481

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +3

Query: 261 FLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLP-PLNLDMLQIGNIVN 437
           ++ E + ED D++ +L   Y+ +   + + D    K+   R+ +P  +  ++L+      
Sbjct: 78  YVLEGWPEDKDQVDELAREYWNYKEELSVEDGLLFKS--DRIVVPRSMRAEVLE-----E 130

Query: 438 IFSNYYISRXRSCYTENAFQNVQ 506
           I+  +   R RSC   NAF+N Q
Sbjct: 131 IYMEHTWDRVRSCQICNAFRNQQ 153


>SB_51241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 380 FQNIFAFLRVYYLNRIVKWKIIEG*IFYFVSILIIHFTQETILSK*SYTIAI 225
           + N    L V+Y NR++   ++     YFV +L +H+T   I+    YT  +
Sbjct: 57  YTNRVIVLPVHYTNRVI---VLPVNYTYFVIVLPVHYTNRVIVLPVHYTYLV 105


>SB_40336| Best HMM Match : Tubulin_C (HMM E-Value=1.3e-32)
          Length = 488

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 294 EIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDML 416
           ++ ++T+N  PF     ++ ++     L  V+LPP  LD +
Sbjct: 298 DLNEITMNLVPFPKLHYLVSSQTPLYALTDVKLPPRRLDQM 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,032,763
Number of Sequences: 59808
Number of extensions: 229922
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)