Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0197
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    28   3.9  
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    28   3.9  
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    27   6.7  

>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
 Frame = +3

Query: 288  ADEIKDLTLNYFPFDNSVQI-IDAKKGKNV---LKRVQLPPLNLDMLQIGNIVNIFSNYY 455
            ADE K +T++  P +N +QI +D+  GK V   ++ +  P  + D L I +++N   NY+
Sbjct: 1023 ADEHKIVTIDSIPVENDIQIVVDSFSGKWVELSVEELTEPKESDDELSIESLLNSAKNYF 1082

Query: 456  IS 461
             S
Sbjct: 1083 AS 1084


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
 Frame = +3

Query: 288  ADEIKDLTLNYFPFDNSVQI-IDAKKGKNV---LKRVQLPPLNLDMLQIGNIVNIFSNYY 455
            ADE K +T++  P +N +QI +D+  GK V   ++ +  P  + D L I +++N   NY+
Sbjct: 1023 ADEHKIVTIDSIPVENDIQIVVDSFSGKWVELSVEELTEPKESDDELSIESLLNSAKNYF 1082

Query: 456  IS 461
             S
Sbjct: 1083 AS 1084


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 210 KQVDIDSNGIRLL**YSFLCEMYDEDADEIKDLTL 314
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
           protein K08F8.6 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 210 KQVDIDSNGIRLL**YSFLCEMYDEDADEIKDLTL 314
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
           protein T05H10.1 protein.
          Length = 1326

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 17/81 (20%), Positives = 40/81 (49%)
 Frame = +3

Query: 261 FLCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRVQLPPLNLDMLQIGNIVNI 440
           ++CE      D  K L +  FP+  ++Q+       N + R++L     D +   +++++
Sbjct: 269 YMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLN----DKMTFPDVLDL 324

Query: 441 FSNYYISRXRSCYTENAFQNV 503
             N Y+++ +   T +A+Q +
Sbjct: 325 --NDYVNKEKRSTTSSAWQQI 343


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
           subunit Med13 protein.
          Length = 2862

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 210 KQVDIDSNGIRLL**YSFLCEMYDEDADEIKDLTL 314
           K V +D +G+RLL    FLC   DED   ++ + L
Sbjct: 419 KMVLLDIDGVRLLYPSKFLCVTIDEDRQMLESIGL 453


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 353 VYYLNRIVKWKIIEG*IFYFVSILIIHFTQETILSK*SYTIAIDINLFMLGNKSM 189
           V Y      W + E   F+F+S+  I F   T     S+T+A+   +F+LG  S+
Sbjct: 241 VAYFAYFENWTLFESVYFFFISMTTIGFGDFTP----SHTVAVGGIVFILGGLSV 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,004,915
Number of Sequences: 27780
Number of extensions: 194844
Number of successful extensions: 494
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)