Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0197
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61060.1 68418.m07662 histone deacetylase family protein simi...    29   2.7  
At3g10320.1 68416.m01238 expressed protein contains Pfam domain,...    28   4.7  
At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein co...    27   6.2  

>At5g61060.1 68418.m07662 histone deacetylase family protein similar
           to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo sapiens};
           contains Pfam profile PF00850: Histone deacetylase
           family
          Length = 660

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 31  HIYIIHNREFVSLMRRLCANKTDYKNKRI 117
           H+ ++H ++ V+L++ +   + DY+  RI
Sbjct: 81  HLQLVHTKDHVNLVKSISTKQKDYRRNRI 109


>At3g10320.1 68416.m01238 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 494

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 210 KQVDIDSNGIRLL**YSFLCEMYDEDADEIKD---LTLNYFPFDNSVQIIDAK 359
           K++ +D NG ++L   S L E YD+D   +KD   +T   + F   + + D K
Sbjct: 421 KKLGLDYNGYKILPRESSLYEKYDKDDPILKDPNSITKKGWQFTKGIYLNDQK 473


>At3g55150.1 68416.m06125 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit; tomato leucine zipper-containing protein,
           Lycopersicon esculentum, PIR:S21495
          Length = 636

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 264 LCEMYDEDADEIKDLTLNYFPFDNSVQIIDAKKGKNVLKRV 386
           LC++ D  A+  KD++L+Y    N++QII    G   L+ +
Sbjct: 445 LCKL-DTKAEHYKDVSLSYLFLANNLQIIIETVGSTPLRNL 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,821,525
Number of Sequences: 28952
Number of extensions: 162830
Number of successful extensions: 353
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)