Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0196
         (449 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00005101AE Cluster: COG4932: Predicted outer membran...    32   5.0  
UniRef50_O23054 Cluster: YUP8H12.26 protein; n=1; Arabidopsis th...    31   8.8  
UniRef50_Q16KA1 Cluster: Putative uncharacterized protein; n=1; ...    31   8.8  

>UniRef50_UPI00005101AE Cluster: COG4932: Predicted outer membrane
           protein; n=1; Brevibacterium linens BL2|Rep: COG4932:
           Predicted outer membrane protein - Brevibacterium linens
           BL2
          Length = 464

 Score = 32.3 bits (70), Expect = 5.0
 Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
 Frame = -3

Query: 408 DISQHPNHDSEQPPELLKTAVPRRGAKXNAXSTSXXVRGASLGNGDSVTSXAIAXXIWVW 229
           D   +P + + Q     + A P      N  + +      ++GN D+  S AI   +   
Sbjct: 178 DAHVYPKNKTNQTTPTKEVAAPATPVLGNTVTWTITAPVPNIGNDDTYRSFAITDSL--- 234

Query: 228 RXTXHLTTASNGSDSSSRGTEYSTTC--RTARRAYSKARMACDTGG 97
                LT  S   +  + GT+Y+ TC  +TA   ++   +   TGG
Sbjct: 235 --DPRLTCESIAVEGFTSGTDYTATCDGQTANVKFTSTGLGKLTGG 278


>UniRef50_O23054 Cluster: YUP8H12.26 protein; n=1; Arabidopsis
           thaliana|Rep: YUP8H12.26 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 402

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = -3

Query: 402 SQHPNHDSEQPPELLKTAVPRRGAKXNAXSTSXXVRGASLGNGDSVTSXAIAXXIWVWRX 223
           + +PN D+   P    T VP    + ++ STS         +G +  S +      +   
Sbjct: 28  NSNPNADASSMPSTNTTTVP----QTSSSSTSSTTTATESSSGTTAESSSSTKSATMSGS 83

Query: 222 TXHLTTASNGSDSSSRGT-EYSTTCRTA 142
           T H T+++  S ++S  T  YST+  T+
Sbjct: 84  TTHTTSSATASSTASTSTSSYSTSYSTS 111


>UniRef50_Q16KA1 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 1003

 Score = 31.5 bits (68), Expect = 8.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 216 HLTTASNGSDSSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 88
           H++++ +GSDS +  +      R  R  Y K RMA  TG  AS
Sbjct: 297 HISSSESGSDSETSDSPSLLRERHLREKYKKRRMAVGTGKPAS 339


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 366,450,856
Number of Sequences: 1657284
Number of extensions: 5085214
Number of successful extensions: 14197
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14186
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23604537544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)