Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0196
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    24   0.57 
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    24   0.57 
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    22   3.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   9.4  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 384 DSEQPPELLKTAVPRRGAKXNAXSTS 307
           D  +PPEL  +     GA+ NA STS
Sbjct: 37  DGGKPPELTGSTNGDGGARSNADSTS 62


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.57
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 384 DSEQPPELLKTAVPRRGAKXNAXSTS 307
           D  +PPEL  +     GA+ NA STS
Sbjct: 193 DGGKPPELTGSTNGDGGARSNADSTS 218


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 345 APRSSRALEAVRCRGSDVGKCRRLAA 422
           AP+   + E   C+  D G+  RL A
Sbjct: 28  APKKEDSFEVELCKDKDAGEWFRLVA 53


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 401 PNIRTTTANSLQSS*RPRCHDAE 333
           PN R  +  S  S  +PRC   E
Sbjct: 80  PNSRCNSRESSDSLVQPRCPSGE 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,257
Number of Sequences: 336
Number of extensions: 1159
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)