Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0196
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z81076-3|CAB03052.1|  394|Caenorhabditis elegans Hypothetical pr...    27   8.3  
AL117204-6|CAB55149.2|  833|Caenorhabditis elegans Hypothetical ...    27   8.3  

>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -3

Query: 213 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 88
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>Z81076-3|CAB03052.1|  394|Caenorhabditis elegans Hypothetical
           protein F35C5.3 protein.
          Length = 394

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 444 ETGSYNIKRPVADISQHPNHDSEQ 373
           +TGS N++     I +HP  DSE+
Sbjct: 343 QTGSTNLEATTEQICKHPTKDSEE 366


>AL117204-6|CAB55149.2|  833|Caenorhabditis elegans Hypothetical
           protein Y116A8C.13 protein.
          Length = 833

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 411 ADISQHPNHDSEQPPELLKTAVPRRGAK 328
           AD++     DS++PPE  K AV   G +
Sbjct: 756 ADVTDEVVEDSQEPPEATKPAVAAAGLR 783


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,163,434
Number of Sequences: 27780
Number of extensions: 111778
Number of successful extensions: 292
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)