Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0195
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    30   0.21 
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    28   0.84 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   3.4  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    26   3.4  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   5.9  

>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 29.9 bits (64), Expect = 0.21
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 257  FEVT-LSPFPSDAPLTSMDVERALSFAPRRGTAVFKSSGGCSLFVVRMLG 403
            FEV  LS FPSD   T   +ER+     R GTAVF+S+G   + V+  LG
Sbjct: 1371 FEVNGLSHFPSDIEDT---IERSHPRIARGGTAVFQSAGRV-VVVIEALG 1416


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 435 VTILSGQSPTFPNIRTTNSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGNGDSVTSN 256
           + +++  SP  P +R    +     L TAV     KLN+    +LV+ A   N + +T  
Sbjct: 260 ILVINVSSPNTPGLRNLQKKSALSTLLTAVVSERNKLNSPHPPVLVKIAPDLNEEELTDI 319

Query: 255 A 253
           A
Sbjct: 320 A 320


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 385  EQRTASRALEDRGATTRSEAQRAL 314
            E  +AS  LEDR A  ++EAQR +
Sbjct: 1218 ESPSASSNLEDRAARIKAEAQRRM 1241


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 335 ERSSTRALRPYSSEERRSGTETA*LQTPSQFSFGYGG 225
           ++ S  A      +E  S   ++  QTPS+FS  YGG
Sbjct: 37  DKPSAGAAPAVGDDESVSSRGSSRSQTPSEFSSNYGG 73


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = -3

Query: 438 RVTILSGQSPTFPNIRTTNSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGNGDSVTS 259
           R T  S  S + P  + T S  P     T VP    +L+  STSI     SL +  SVT 
Sbjct: 279 RRTYSSISSSSSPFKKKTQSHLPNRT--TEVPSISKQLSKSSTSIATVAPSLASVSSVTK 336

Query: 258 N 256
           +
Sbjct: 337 S 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,022
Number of Sequences: 5004
Number of extensions: 28607
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)