Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS0195
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0457 + 10503801-10507358 31 0.37
02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227 31 0.49
11_03_0128 - 10437407-10438049,10438097-10438272 29 1.5
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 29 1.5
09_04_0500 - 18120287-18122233 29 2.6
08_02_0157 - 13385589-13385675,13386187-13386357,13386572-133867... 28 4.5
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 28 4.5
02_05_0744 - 31428834-31428991,31429079-31429155,31429252-314293... 27 6.0
11_06_0134 + 20454405-20455121 27 7.9
08_02_1080 - 24197514-24199415 27 7.9
04_04_1304 + 32490971-32491552 27 7.9
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 27 7.9
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658... 27 7.9
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 31.5 bits (68), Expect = 0.37
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 GRRARVELRSASWHRGLQ-ELWRLFAVRGSDVGKCRRLAA*YCNSLFERCFSFSVL 471
GR R L A W+ LQ ELW L +++ RL+ Y +RCFSF L
Sbjct: 431 GRLLRTSLDIAHWNNILQSELWEL-RQHNTEILPALRLSYLYLPFHLKRCFSFCAL 485
>02_02_0461 + 10534733-10536302,10536347-10536396,10536845-10538227
Length = 1000
Score = 31.1 bits (67), Expect = 0.49
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 307 GRRARVELRSASWHRGLQ-ELWRLFAVRGSDVGKCRRLAA*YCNSLFERCFSF 462
GR R+ L + W+R L+ ELW L +++ RL+ Y + +RCFSF
Sbjct: 418 GRLLRMSLDTEYWNRILKSELWEL-KQNNTEILPALRLSYLYLPTHLKRCFSF 469
>11_03_0128 - 10437407-10438049,10438097-10438272
Length = 272
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 186 SSSRGTEYSTTCRTARRAYSKARMACDTGGKAS 88
S S + STTCRT RA + C TG + S
Sbjct: 132 SRSTASTSSTTCRTCCRATPNSTSPCKTGSRCS 164
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 383 TANSLQSS*RPRCHDAERSSTRALRPYSSEERR 285
T + +S RPR D+E ++ L PYSSE++R
Sbjct: 446 TDSGEDNSRRPRSGDSEIPNSSKLEPYSSEQQR 478
>09_04_0500 - 18120287-18122233
Length = 648
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 268 AVSVPERRSSDEYGRRARVELRSASWHR 351
AV+V +R S EY +R E RS SW R
Sbjct: 2 AVAVLDRSFSSEYPASSRTEGRSCSWKR 29
>08_02_0157 -
13385589-13385675,13386187-13386357,13386572-13386792,
13390090-13390240,13390682-13390726,13391121-13391330
Length = 294
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 237 WVWRLTDHLTTASNGSDSSSRGT 169
WV L + +TTASN D+ SR T
Sbjct: 163 WVELLVNEMTTASNMDDAKSRAT 185
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 218 SVSRHTQMRTAMAFEVTLSPFPSDAPLTSMDVERAL 325
SVS + R A A S FPS P T DV R L
Sbjct: 139 SVSSRRRARRAAAVTRRSSAFPSSTPPTQEDVRRGL 174
>02_05_0744 -
31428834-31428991,31429079-31429155,31429252-31429302,
31429379-31429452,31429522-31429647,31431317-31431461,
31431552-31432114
Length = 397
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -3
Query: 450 PFEQRVTILSGQSPTFPNIRTTNSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGNGD 271
P +QRVTILS P +S P ++ + G A +T++ G +
Sbjct: 125 PEDQRVTILSVVKKDEPADDVRDSVNPVTVVGYRDEKGGTSGTAGTTAVRPAGTRSSSFH 184
Query: 270 SVTSNAIAVL 241
VTS I VL
Sbjct: 185 GVTSQIIPVL 194
>11_06_0134 + 20454405-20455121
Length = 238
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 277 VPERRSSDEYGRRARVELRSASWHRGLQELWRLFAVR-GSDVGK 405
VP R GRR E+R+ W G WR A R G DVG+
Sbjct: 18 VPTRPRERRRGRRRSGEIRATPW-LGRGRGWRSGAGRGGGDVGR 60
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 268 AVSVPERRSSDEYGRRARVELRSASWHR 351
AV+VP+ ++ Y + ++E RS SW R
Sbjct: 2 AVAVPDHTFNNGYSSKNQIEGRSLSWKR 29
>04_04_1304 + 32490971-32491552
Length = 193
Score = 27.1 bits (57), Expect = 7.9
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 239 MRTAMAFEVTLSPFPSDAPLTSMDVERALSFAPRRGTAVFKSSGGCSLFVVR 394
+RTA A +L P P +P S+D+ S+AP TAV + S +R
Sbjct: 49 IRTAAAASASLPPVPGYSPRMSIDMACTHSWAPY--TAVIPALRSLSFLSLR 98
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 317 RALSFAPRRGTAVFKSSGGCSLFVVRMLGNVGDWPLNIV 433
R + +A + S S FV++ LGNVG W ++
Sbjct: 187 RGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLI 225
>02_04_0281 +
21563588-21563696,21565053-21565708,21565793-21565879,
21566487-21567461,21567640-21567786
Length = 657
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -1
Query: 419 ASRRHFPTSEPRTANSLQSS*RPRCHDAERSSTRALRPYSSEERRSGTE 273
+S H RT++S SS PR HD +R R Y+S R E
Sbjct: 49 SSSGHHRDQNSRTSSSRISSNGPRKHDRDRDGMGKSRGYASFGRNRERE 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,367,650
Number of Sequences: 37544
Number of extensions: 222182
Number of successful extensions: 757
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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