Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0195
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)                        31   0.49 
SB_52754| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)                  27   6.1  
SB_49505| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_50114| Best HMM Match : DUF1168 (HMM E-Value=1.7)                   27   6.1  
SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)                  27   6.1  
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
          Length = 256

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -1

Query: 470 NTENEKHRSNSELQY*AASRRHFPTSEPRTANSLQSS*RPRCHDAERSSTRALRPYSSEE 291
           N   E+H+S +  +  +   RH P S  R+ +  +S  R R     RS + ++ P S + 
Sbjct: 83  NDNKERHQSRATRRSKSPKHRHRPESRSRSGSRSKSRSRSRSRGRSRSYSISISPDSHKS 142

Query: 290 R 288
           R
Sbjct: 143 R 143


>SB_52754| Best HMM Match : Pox_TAA1 (HMM E-Value=2.2)
          Length = 347

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 391 NHEQRTASRALEDRGATTRSEAQRALYVH 305
           NH++R      +  G  TR + QRA+Y+H
Sbjct: 160 NHKKRLVRDFAKLAGIETREKPQRAIYIH 188


>SB_49505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 309 T*SAR*ASLRVVAPRSSRALEAVRCSWFGC 398
           T +A  A+  + A  ++ A  A+RC+WF C
Sbjct: 26  TATASTATASIAAAAATTATTALRCAWFAC 55


>SB_50114| Best HMM Match : DUF1168 (HMM E-Value=1.7)
          Length = 269

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -3

Query: 465 GKRKTPFEQRVTILSGQSPTFPNIRTTNSEQPPELLKTAVPR-RGAKLNARSTSILVRGA 289
           GK + PF ++    +    T P+IR TN      +  T +P  R    N +  ++ V   
Sbjct: 38  GKSRFPFARKKAKATEAKSTLPDIRDTNDNALVNMRTTDLPNVRDLYTNKKDNAVPVASE 97

Query: 288 SLGNGDSVTSNAIAV 244
                  +T + +A+
Sbjct: 98  GASATTPITGSHLAM 112


>SB_3978| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-06)
          Length = 259

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 228 RLTDHLTTASNGSDSSSRGTEYST 157
           RLT++  +ASNGSD  +   E ST
Sbjct: 2   RLTNYTLSASNGSDDETSNKEVST 25


>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +2

Query: 275 PFP---SDAP---LTSMDVERALSFAPRRGTAVFKSSGGCSLFVVR 394
           PFP   SDA    L S DV  A SF P  G   ++SSG    F  R
Sbjct: 435 PFPANESDARAHRLCSNDVAMATSFEPSNGAQSYRSSGYTCRFPAR 480


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,887,692
Number of Sequences: 59808
Number of extensions: 244148
Number of successful extensions: 663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)