Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0195
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    30   1.00 
U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of c...    30   1.00 
AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrat...    30   1.00 
U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical pr...    28   3.1  
M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical pr...    28   3.1  
M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical pr...    28   3.1  
U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned expre...    28   4.0  
U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned expre...    28   4.0  
U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned expre...    28   4.0  
U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van gogh/...    27   5.3  
U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van gogh/...    27   5.3  
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas...    27   9.3  
AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical...    27   9.3  
AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical...    27   9.3  
AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +2

Query: 218  SVSRHTQMRTAMAFEV-TLSPFPSDAPLTSMDVERALSFAPRRGTAVFKSSGGCSLFVVR 394
            + +R T  R  M+  V  LS  PS    TS  +  A SF P       +S+G     VVR
Sbjct: 1791 AAARRTSPRVPMSSNVPALSSRPSSRMSTSSRISTASSFVPESVAVPLQSTGSAFDVVVR 1850

Query: 395  MLG 403
              G
Sbjct: 1851 QSG 1853


>U55366-1|AAA97980.2|  430|Caenorhabditis elegans Suppressor of clr
           protein 1 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSFAPRRGTA 352
           + +A   T SP PSD    S+DV+R L+F   R  A
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>AF419335-1|AAL15971.1|  430|Caenorhabditis elegans multisubstrate
           adaptor proteinSOC-1 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 245 TAMAFEVTLSPFPSDAPLTSMDVERALSFAPRRGTA 352
           + +A   T SP PSD    S+DV+R L+F   R  A
Sbjct: 391 STLAATSTRSPTPSDIEYISVDVDRTLAFKQMRRAA 426


>U50301-2|AAM29675.1|  362|Caenorhabditis elegans Hypothetical
           protein F20D6.5 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 20/56 (35%), Positives = 26/56 (46%)
 Frame = +1

Query: 247 CDGV*SHAVSVPERRSSDEYGRRARVELRSASWHRGLQELWRLFAVRGSDVGKCRR 414
           C G  S    + E+     Y  RA V+ +S +W    Q+L RLF    S  GK RR
Sbjct: 232 CHGDYSFHNLLYEKHCDGSYKFRAIVDFQSVNWGNAAQDLSRLFVTAMS--GKDRR 285


>U88180-1|AAB42294.1|  203|Caenorhabditis elegans Hypothetical
           protein T27A3.4 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -3

Query: 213 LTTASNGSDSSSRGTEYSTT--CRTARRAYSKARMACDTGGKAS 88
           ++  S G  SSSRG+ Y  T   R+++R+ S++R    +G ++S
Sbjct: 104 VSRGSKGRRSSSRGSVYGRTGRSRSSKRSRSRSRPRTRSGSRSS 147


>M98552-4|AAP68923.1| 1353|Caenorhabditis elegans Hypothetical protein
            ZK370.4b protein.
          Length = 1353

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 322  VELRSASWHRGLQELWR 372
            VE R+ASW  G+  LWR
Sbjct: 993  VETRAASWFNGMSSLWR 1009


>M98552-3|AAP68922.1| 1342|Caenorhabditis elegans Hypothetical protein
            ZK370.4a protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 322  VELRSASWHRGLQELWR 372
            VE R+ASW  G+  LWR
Sbjct: 982  VETRAASWFNGMSSLWR 998


>U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned
           expression site protein22, isoform c protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 403 SQHPNHEQRTASRALEDRGATTRSEAQR 320
           S HPN     AS A+ED   +   E QR
Sbjct: 287 SPHPNRSTSAASGAIEDEAVSQNPEVQR 314


>U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned
           expression site protein22, isoform a protein.
          Length = 677

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 403 SQHPNHEQRTASRALEDRGATTRSEAQR 320
           S HPN     AS A+ED   +   E QR
Sbjct: 232 SPHPNRSTSAASGAIEDEAVSQNPEVQR 259


>U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned
           expression site protein22, isoform b protein.
          Length = 777

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 403 SQHPNHEQRTASRALEDRGATTRSEAQR 320
           S HPN     AS A+ED   +   E QR
Sbjct: 287 SPHPNRSTSAASGAIEDEAVSQNPEVQR 314


>U52000-2|AAK68677.1|  529|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform b protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 330 SLRVVAPRSSRALEAVRCSWFGCWEMSATGRLIL*LAVRTVFFVFRVNI 476
           SL ++APR   ++ A++C      ++   G L L +A++T+F V  + +
Sbjct: 120 SLPIIAPRFGFSMPAIQC------DVDCEGLLFL-MAIKTIFLVIAIGV 161


>U52000-1|AAA96091.1|  532|Caenorhabditis elegans Vang (van
           gogh/strabismus planarpolarity protein) homolog protein
           1, isoform a protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +3

Query: 330 SLRVVAPRSSRALEAVRCSWFGCWEMSATGRLIL*LAVRTVFFVFRVNI 476
           SL ++APR   ++ A++C      ++   G L L +A++T+F V  + +
Sbjct: 123 SLPIIAPRFGFSMPAIQC------DVDCEGLLFL-MAIKTIFLVIAIGV 164


>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
            ccr4/not complexcomponent) protein 1 protein.
          Length = 2500

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 227  RHTQMRTAMAFEVTLSPFPSDAPLTSMDVERALSFAPR 340
            RHT + +A A   + +P P+ AP     V RA S  P+
Sbjct: 1086 RHTPVGSAQAGSASSTPTPAAAPTNWGAVARAASVDPK 1123


>AL132860-16|CAB60516.1|  497|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17b protein.
          Length = 497

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 411 PTFPNIRTTNSEQPPELLKTAVPRRGAKLNARSTSILVRGAS-LGNGDSV 265
           P F +I     E P  L KTA P       A +    +RG   LG  +SV
Sbjct: 128 PKFGDISVITKETPAPLAKTAEPLVAPAAPATARKRAIRGGGPLGGAESV 177


>AL132860-15|CAB60499.1|  512|Caenorhabditis elegans Hypothetical
           protein Y56A3A.17a protein.
          Length = 512

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = -3

Query: 411 PTFPNIRTTNSEQPPELLKTAVPRRGAKLNARSTSILVRGAS-LGNGDSV 265
           P F +I     E P  L KTA P       A +    +RG   LG  +SV
Sbjct: 128 PKFGDISVITKETPAPLAKTAEPLVAPAAPATARKRAIRGGGPLGGAESV 177


>AL023493-2|CAD44137.1|  909|Caenorhabditis elegans Hypothetical
           protein H20J18.1b protein.
          Length = 909

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 20/74 (27%), Positives = 28/74 (37%)
 Frame = -3

Query: 390 TTNSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLTDHL 211
           TT +  P   +  A P   A   A   +     A  GNG+  ++ A  VL  +    DH 
Sbjct: 650 TTTASHPVNPIGIANPLSAASAAAGFHTTKTSTAVSGNGNPGSNVATPVLSIIQMSEDHF 709

Query: 210 TTASNGSDSSSRGT 169
           T     SD    G+
Sbjct: 710 TDTFRKSDQKLNGS 723


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,932,566
Number of Sequences: 27780
Number of extensions: 166976
Number of successful extensions: 537
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)