Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0195
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   0.74 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.7  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 309 SILVRGASLGNGDSVTSNAIAVLIWVWR 226
           SI  R +++ +GD +T N + + + VWR
Sbjct: 169 SIEARDSAIFDGDFITENNLPLGLEVWR 196


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 468 HGKRKTPFEQRVTILSGQSPTFPNIRTTNSEQPPELLKT 352
           +G+R+  F +R  ILS  S   P +   +   P E L++
Sbjct: 305 NGRRRIIFARREVILSAGSVNTPQLLMLSGIGPKEHLRS 343


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 415 VADISQHPNHEQRTASRALEDRGATTRSEA 326
           ++D  QH    + + S  +E+R A   SEA
Sbjct: 721 LSDTEQHFRQHRDSLSPRVENRSAIVHSEA 750


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,264
Number of Sequences: 438
Number of extensions: 2312
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)