Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0195
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26130.1 68418.m03108 pathogenesis-related protein, putative ...    32   0.17 
At4g10350.1 68417.m01700 no apical meristem (NAM) family protein...    29   1.2  
At5g04960.1 68418.m00525 pectinesterase family protein contains ...    28   2.8  
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    28   2.8  
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3...    28   2.8  
At2g01420.2 68415.m00063 auxin transport protein, putative simil...    28   2.8  
At5g08010.1 68418.m00932 expressed protein condensin subunit SMC...    27   5.0  
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ...    27   5.0  
At3g10710.1 68416.m01289 pectinesterase family protein contains ...    27   6.5  
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro...    27   6.5  
At3g15250.1 68416.m01926 expressed protein ; expression supporte...    27   8.7  

>At5g26130.1 68418.m03108 pathogenesis-related protein, putative
           similar to PR-1a protein [Nicotiana tabacum] GI:19944;
           contains Pfam profile PF00188: SCP-like extracellular
           protein
          Length = 164

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = -3

Query: 351 AVPRRGAKLNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRG 172
           A  R+G      S S  + G +L       S A AV +WV   +D++  ++  SD    G
Sbjct: 62  AQQRKGDCSLTHSNSNGLYGENLAWSGGALSGAEAVKLWVNEKSDYIYASNTCSDGKQCG 121

Query: 171 TEYSTTCRTARRAYSKARMACDTGG 97
                  RT+      A++ CD GG
Sbjct: 122 HYTQVVWRTSEWV-GCAKVKCDNGG 145


>At4g10350.1 68417.m01700 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           nap gene, Arabidopsis thaliana, gb:AJ222713
          Length = 341

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 294 GASLGNGDSVTSNAIAVLIWVWRLTDHLTTASNGSDSSSRGTEY 163
           G  +G  ++V S+     +  W + D L T   G++ SSRG  Y
Sbjct: 265 GLDVGTCETVASHNHQQGLGEWAMMDRLVTCHMGNEDSSRGITY 308


>At5g04960.1 68418.m00525 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 564

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 333 AKLNARSTSILVRGAS-LGNGDSVTSNAIAVLIWVWRLTD 217
           A + A   S+   G + L N   +TSNA+A++ W+ ++ D
Sbjct: 177 ALVEANKPSLTTFGENHLKNSTEMTSNALAIITWLGKIAD 216


>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 234 VWRLTDHLTTASNGSDSSSRGTEYSTT 154
           +W + DH+T A  GSDS S G+ +  T
Sbjct: 235 LWNIQDHITMA--GSDSKSPGSSFKQT 259


>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
           almost identical to SC35-like splicing factor SCL30a
           GI:9843661 from [Arabidopsis thaliana]; contains Pfam
           profile PF00076: RNA recognition motif. (a.k.a. RRM,
           RBD, or RNP domain)
          Length = 262

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 459 RKTPFEQRVTILSGQSPTFPNIRTTNSEQPPELLKTAVPRRGAKLNARS 313
           RK P E R     G+S  F + R +    PP   ++  PRRG +  +RS
Sbjct: 117 RKKPTEMRTRDRGGRSNRFQDRRRS----PPRYSRSPPPRRGRRSRSRS 161


>At2g01420.2 68415.m00063 auxin transport protein, putative similar
           to auxin transport protein PIN7[Arabidopsis thaliana]
           gi|5817305|gb|AAD52697
          Length = 616

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = -3

Query: 399 NIRTTNSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAIAVLIWVWRLT 220
           N+ T  SEQ  + ++  V  +  K NAR     + G   G G+     A A L  +   +
Sbjct: 371 NVATEQSEQGAKEIRMVVSDQPRKSNARGGGDDIGGLDSGEGEREIEKATAGLNKMGSNS 430

Query: 219 DHLTTASNGSDSSSRGTEYSTT 154
                A+ G    + GT    T
Sbjct: 431 TAELEAAGGDGGGNNGTHMPPT 452


>At5g08010.1 68418.m00932 expressed protein condensin subunit SMC4,
           Drosophila melanogaster, EMBL:AF186472
          Length = 566

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 28  SIPKFHSSLQDLKQPSLQXPRCLATRV 108
           ++ K  SS +DL    L+ PRCLA+ V
Sbjct: 21  NVSKGKSSSEDLTNVKLESPRCLASNV 47


>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
           putative nearly identical to 67kD chloroplastic
           RNA-binding protein, P67 [Arabidopsis thaliana]
           GI:9755842
          Length = 688

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 298 DEYGRRARVELRSASWHRGLQELWRLFAVRGSDVGKCRRLAA*Y--CNSLFERCFSFSV 468
           D YGR   V++  + + R   E WR+ AV  S + +   ++  Y  C +++E   +  V
Sbjct: 239 DAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGV 297


>At3g10710.1 68416.m01289 pectinesterase family protein contains
           similarity to pectinesterase GB:AAB57671 [Citrus
           sinensis]; contains Pfam profile: PF01095 pectinesterase
          Length = 561

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 285 LGNGDSVTSNAIAVLIWVWRLTD 217
           L N   +TSNA+A++ W+ ++ D
Sbjct: 198 LKNSTELTSNALAIITWLGKIAD 220


>At1g70140.1 68414.m08071 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 760

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 477 LY*HGKRKTPFEQRVTILSGQSPTFPNIRTTNSEQPPELLKTAVP 343
           +Y   K+KT     + +L G+S T  ++      QPP  +K + P
Sbjct: 192 IYYKNKKKTEPVTEIPLLRGRSSTSHSVIHNEDHQPPPQVKQSEP 236


>At3g15250.1 68416.m01926 expressed protein ; expression supported
           by MPSS
          Length = 217

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
 Frame = -3

Query: 390 TTNSEQPP------ELLKTAVPRRGAKLNARSTSILVRGASLGNGDSVTSNAIAVLIWVW 229
           TTNS++PP       L  T+  +     N+ +  +   G  L +     S+ I     + 
Sbjct: 7   TTNSDEPPPEFEFGSLTPTSPSQDSFSENSPADHLFFNGRLLPHAFPAASS-IYTKRSIS 65

Query: 228 RLTDHLTTASNGSDSSSR-GTEYSTTCRTARRAYS 127
             T   T+  N ++SSS  G+  S+T ++ R +YS
Sbjct: 66  STTSEYTSRCNSTNSSSSFGSNNSSTSQSPRTSYS 100


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,530,746
Number of Sequences: 28952
Number of extensions: 160977
Number of successful extensions: 566
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)