Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0191
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   4.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   6.3  
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    25   8.4  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    25   8.4  
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce...    25   8.4  

>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -1

Query: 307 PASWRWTCRSPW 272
           P +W W C  PW
Sbjct: 194 PKNWAWACDGPW 205


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 333 QFGAHGVPVRLHGAGRAEAHGPAVNPGDVFIGKYYTE 223
           ++GA G PV  + A R +    A N  + +   Y +E
Sbjct: 74  EYGATGTPVNANNASRVDYATTAANVPEEYANDYSSE 110


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 453 IASGSTSWTAASYRTCRESLLPSPGNDFTLEGN 355
           I S   SWT  +  TCR   L  P ND     N
Sbjct: 77  IHSNLGSWTTTAQSTCRIFDLKHPENDLWTSTN 109


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 390 PSPGNDFTLEGNDTCSGXAQFGAHGVPV 307
           P P  D+T E N++C   A  G+  V V
Sbjct: 162 PRPTGDYTAEENESCLNNAAPGSPEVAV 189


>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 813

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 43  YKSYITLNSYCNVILVQHID 102
           Y+S I++NS  NV ++ HID
Sbjct: 19  YQSNISINSIRNVGIIAHID 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,724,958
Number of Sequences: 5004
Number of extensions: 31697
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)